Miyakogusa Predicted Gene

Lj4g3v0496570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0496570.1 Non Chatacterized Hit- tr|I1HRP6|I1HRP6_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,44.44,3e-18,seg,NULL,CUFF.47499.1
         (488 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18490.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    75   1e-13
AT4G18490.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    75   2e-13

>AT4G18490.1 | Symbols:  | unknown protein; Has 30201 Blast hits
          to 17322 proteins in 780 species: Archae - 12; Bacteria
          - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
          Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
          BLink). | chr4:10204388-10208197 FORWARD LENGTH=756
          Length = 756

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 5/61 (8%)

Query: 31 SWKSMSIVNDDAMDFGFDTVSKSKKKTFDFEKLDMNFDLDGDFGKMSSFKVDMSDLDFTS 90
          +W   S+ +DD MDFGF + +K+KK  F   KLDM FDLDGDFG  SSFK+DM D DF+S
Sbjct: 29 TWNFKSMTDDDPMDFGFGSPAKNKKNAF---KLDMGFDLDGDFG--SSFKMDMPDFDFSS 83

Query: 91 P 91
          P
Sbjct: 84 P 84


>AT4G18490.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; EXPRESSED IN: shoot, shoot
          apex, embryo, flower, seed; EXPRESSED DURING: petal
          differentiation and expansion stage, E expanded
          cotyledon stage; Has 30201 Blast hits to 17322 proteins
          in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
          17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
          Eukaryotes - 2996 (source: NCBI BLink). |
          chr4:10204388-10208197 FORWARD LENGTH=755
          Length = 755

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 5/61 (8%)

Query: 31 SWKSMSIVNDDAMDFGFDTVSKSKKKTFDFEKLDMNFDLDGDFGKMSSFKVDMSDLDFTS 90
          +W   S+ +DD MDFGF + +K+KK  F   KLDM FDLDGDFG  SSFK+DM D DF+S
Sbjct: 27 TWNFKSMTDDDPMDFGFGSPAKNKKNAF---KLDMGFDLDGDFG--SSFKMDMPDFDFSS 81

Query: 91 P 91
          P
Sbjct: 82 P 82