Miyakogusa Predicted Gene

Lj4g3v0496490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0496490.1 Non Chatacterized Hit- tr|H3GLP9|H3GLP9_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,30.11,4e-18,CHAPERONE ATP11,ATP11; ATP11,ATP11,CUFF.47489.1
         (249 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34050.1 | Symbols:  | INVOLVED IN: protein complex assembly;...   341   3e-94

>AT2G34050.1 | Symbols:  | INVOLVED IN: protein complex assembly;
           LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19
           plant structures; EXPRESSED DURING: 9 growth stages;
           CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591);
           Has 304 Blast hits to 304 proteins in 167 species:
           Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112;
           Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source:
           NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248
          Length = 248

 Score =  341 bits (875), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 153/210 (72%), Positives = 178/210 (84%)

Query: 40  ASQKSHQPEIPCDFQKWGSLGFCRTSRFATGFSPLQRKPLDSIVDVERLKVRDPEDIASA 99
           AS K  +  +P +  KW SLG  R SRFA+GF+PLQ+KPLDSI+D+ R K + PE++ S 
Sbjct: 39  ASSKLSEASLPGNHIKWASLGSVRNSRFASGFTPLQQKPLDSIMDLARAKTKSPEELTSI 98

Query: 100 WDDYHIGRGHIGATMKAKLYHLLEHRASECRYFVIPLWRGSGYTSMFVQAQAPHMIFTGL 159
           WDDYH+GRGHIG TMKA+LY LLE RASECRYFVIPLWRG+GY +MF Q +APHMIFTGL
Sbjct: 99  WDDYHLGRGHIGLTMKAQLYRLLEQRASECRYFVIPLWRGNGYITMFAQVEAPHMIFTGL 158

Query: 160 EDYKARGTQASPYFTVTFYTEFAESKDLVLIRGDVVFTSKLTDSEAKWLLETAQSFYLND 219
           EDYKARGTQA+PY T TFYTE +E+KDLV IRGDVVFTSKLTD EAKW++ETAQSFYLND
Sbjct: 159 EDYKARGTQAAPYLTTTFYTELSETKDLVFIRGDVVFTSKLTDEEAKWIMETAQSFYLND 218

Query: 220 VRYKLVERFNRQTREFEFKDVLQALDMPIL 249
            RYKL+ERFN+ T +FEFKDVLQALDMP+L
Sbjct: 219 SRYKLLERFNKHTHDFEFKDVLQALDMPLL 248