Miyakogusa Predicted Gene
- Lj4g3v0484820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0484820.1 tr|D3GBU6|D3GBU6_LOTJA Auxin response factor 3a
OS=Lotus japonicus GN=ARF3a PE=2 SV=1,99.76,0,FAMILY NOT NAMED,NULL;
Auxin_resp,Auxin response factor,CUFF.47416.1
(409 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33860.1 | Symbols: ETT, ARF3 | Transcriptional factor B3 fam... 158 6e-39
AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 | chr5:243... 123 2e-28
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin respons... 87 3e-17
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin respons... 87 3e-17
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin respons... 87 3e-17
AT5G62000.4 | Symbols: ARF2 | auxin response factor 2 | chr5:249... 86 3e-17
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | Transcriptional factor ... 83 4e-16
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | auxin response fact... 82 8e-16
AT4G23980.2 | Symbols: ARF9 | auxin response factor 9 | chr4:124... 82 1e-15
AT4G23980.1 | Symbols: ARF9 | auxin response factor 9 | chr4:124... 82 1e-15
AT5G37020.1 | Symbols: ARF8, ATARF8 | auxin response factor 8 | ... 80 3e-15
AT5G37020.2 | Symbols: ARF8 | auxin response factor 8 | chr5:146... 80 4e-15
AT1G30330.2 | Symbols: ARF6 | auxin response factor 6 | chr1:106... 75 6e-14
AT1G30330.1 | Symbols: ARF6 | auxin response factor 6 | chr1:106... 75 6e-14
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | Tran... 75 8e-14
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 75 9e-14
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | Tran... 75 9e-14
AT1G34390.1 | Symbols: ARF22 | auxin response factor 22 | chr1:1... 70 2e-12
AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:2... 70 3e-12
AT1G35240.1 | Symbols: ARF20 | auxin response factor 20 | chr1:1... 70 4e-12
AT1G34410.1 | Symbols: ARF21 | auxin response factor 21 | chr1:1... 69 4e-12
AT2G46530.2 | Symbols: ARF11 | auxin response factor 11 | chr2:1... 69 5e-12
AT1G59750.2 | Symbols: ARF1 | auxin response factor 1 | chr1:219... 69 5e-12
AT2G46530.1 | Symbols: ARF11 | auxin response factor 11 | chr2:1... 69 6e-12
AT1G59750.3 | Symbols: ARF1 | auxin response factor 1 | chr1:219... 69 6e-12
AT1G59750.1 | Symbols: ARF1 | auxin response factor 1 | chr1:219... 69 6e-12
AT1G59750.4 | Symbols: ARF1 | auxin response factor 1 | chr1:219... 69 6e-12
AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:1... 69 7e-12
AT1G35540.1 | Symbols: ARF14 | auxin response factor 14 | chr1:1... 67 2e-11
AT1G35520.1 | Symbols: ARF15 | auxin response factor 15 | chr1:1... 67 3e-11
AT1G34170.1 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 | chr1:1... 66 4e-11
AT1G34310.1 | Symbols: ARF12 | auxin response factor 12 | chr1:1... 65 7e-11
AT2G28350.1 | Symbols: ARF10 | auxin response factor 10 | chr2:1... 62 6e-10
AT1G34170.2 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 | chr1:1... 61 1e-09
AT1G34170.3 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 | chr1:1... 61 2e-09
AT4G30080.1 | Symbols: ARF16 | auxin response factor 16 | chr4:1... 59 5e-09
>AT2G33860.1 | Symbols: ETT, ARF3 | Transcriptional factor B3 family
protein / auxin-responsive factor AUX/IAA-related |
chr2:14325444-14328613 REVERSE LENGTH=608
Length = 608
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 112/192 (58%), Gaps = 33/192 (17%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+ R E++DA+ERR G+I GI+D+DP+RWPGSKW+CLLVRWDD+ A RVSPWE
Sbjct: 327 MRFKARVESEDASERRSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWE 386
Query: 60 IEPSGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGASDFGESLRFQKVLQGQEISG 119
IEPSGS S + + KR+RIG S + + PV G+ A+DF ESLRFQ+VLQGQEI
Sbjct: 387 IEPSGSISNSGSFVTTGPKRSRIGFSSGKPDIPVSEGIRATDFEESLRFQRVLQGQEI-- 444
Query: 120 VDTTFDG-INAPSHQSYELRRCYPGSNYPGISSTGSSIRIPQMSSDVSYNSIGFSESFRF 178
F G IN S RR + F +S+ F
Sbjct: 445 ----FPGFINTCSDGGAGARRG-------------------------RFKGTEFGDSYGF 475
Query: 179 QKVLQGQEILPS 190
KVLQGQE +P+
Sbjct: 476 HKVLQGQETVPA 487
>AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 |
chr5:24308558-24312187 REVERSE LENGTH=788
Length = 788
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 110/204 (53%), Gaps = 10/204 (4%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDD-LEATRNNRVSPWEI 60
RFRMRFE DD+ ERRCAG++ G+ D+DP RWP SKW+CLLVRWD+ + RVSPWEI
Sbjct: 345 RFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEI 404
Query: 61 EPSGSASIPNNLMAAS--LKRTRIG-LPSTQLEFPVPNGMGASDFGESLRFQKVLQGQEI 117
+P S S+P+ + +S KR G L +T P+ G DF ES+R KVLQGQE
Sbjct: 405 DP--SVSLPHLSIQSSPRPKRPWAGLLDTTPPGNPITKRGGFLDFEESVRPSKVLQGQEN 462
Query: 118 SGVDTTFDGINAPSHQSYELRRCYPGSNYPGISSTGSSIRIPQMSSDVSYNSI--GFSES 175
G + G + + + + P + S+ R + N G +
Sbjct: 463 IGSASPSQGFDVMNRRILDF--AMQSHANPVLVSSRVKDRFGEFVDATGVNPACSGVMDL 520
Query: 176 FRFQKVLQGQEILPSQPYGGASGY 199
RF +VLQGQEI + + +G+
Sbjct: 521 DRFPRVLQGQEICSLKSFPQFAGF 544
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response
factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859
Length = 859
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R G IVGI + DP RWP SKW+ L VRWD+ + R +RVSPW+
Sbjct: 332 MRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWK 391
Query: 60 IEPSGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGAS----DFGESLRFQKVLQGQ 115
+EP+ + + + KR R + + + + G + D + +VLQGQ
Sbjct: 392 VEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQ 451
Query: 116 EISGVDT 122
E S + T
Sbjct: 452 EYSTLRT 458
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response
factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859
Length = 859
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R G IVGI + DP RWP SKW+ L VRWD+ + R +RVSPW+
Sbjct: 332 MRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWK 391
Query: 60 IEPSGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGAS----DFGESLRFQKVLQGQ 115
+EP+ + + + KR R + + + + G + D + +VLQGQ
Sbjct: 392 VEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQ 451
Query: 116 EISGVDT 122
E S + T
Sbjct: 452 EYSTLRT 458
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response
factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859
Length = 859
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R G IVGI + DP RWP SKW+ L VRWD+ + R +RVSPW+
Sbjct: 332 MRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWK 391
Query: 60 IEPSGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGAS----DFGESLRFQKVLQGQ 115
+EP+ + + + KR R + + + + G + D + +VLQGQ
Sbjct: 392 VEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQ 451
Query: 116 EISGVDT 122
E S + T
Sbjct: 452 EYSTLRT 458
>AT5G62000.4 | Symbols: ARF2 | auxin response factor 2 |
chr5:24910859-24914873 FORWARD LENGTH=853
Length = 853
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R G IVGI + DP RWP SKW+ L VRWD+ + R +RVSPW+
Sbjct: 332 MRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWK 391
Query: 60 IEPSGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGAS----DFGESLRFQKVLQGQ 115
+EP+ + + + KR R + + + + G + D + +VLQGQ
Sbjct: 392 VEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQ 451
Query: 116 EISGVDT 122
E S + T
Sbjct: 452 EYSTLRT 458
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | Transcriptional factor B3
family protein / auxin-responsive factor AUX/IAA-related
| chr1:6887353-6891182 FORWARD LENGTH=902
Length = 902
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF M FET+D+ +RR G IVGI+D+DP+RWPGSKW+ L V WD+ + RVSPW+
Sbjct: 327 MRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWD 386
Query: 60 IEPSGSASIPNNLMAASLKR 79
IE S I +L + LKR
Sbjct: 387 IETPESLFIFPSL-TSGLKR 405
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | auxin response factor
19 | chr1:6628395-6632779 REVERSE LENGTH=1086
Length = 1086
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET+D RR G + GI+D+DPVRW GS+W+ L V WD+ A R +RVS WE
Sbjct: 294 MRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWE 353
Query: 60 IEP 62
IEP
Sbjct: 354 IEP 356
>AT4G23980.2 | Symbols: ARF9 | auxin response factor 9 |
chr4:12451592-12454737 FORWARD LENGTH=636
Length = 636
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDD-LEATRNNRVSPWE 59
MRF+MRFE +D+ ERR +G ++G+ D P W SKW+CL V WD+ +R N+VSPWE
Sbjct: 282 MRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWE 340
Query: 60 IEP-SGSASIPNNLMAASLKRTR 81
IEP S ++P ++M + KR R
Sbjct: 341 IEPFVNSENVPKSVMLKN-KRPR 362
>AT4G23980.1 | Symbols: ARF9 | auxin response factor 9 |
chr4:12451592-12454737 FORWARD LENGTH=638
Length = 638
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDD-LEATRNNRVSPWE 59
MRF+MRFE +D+ ERR +G ++G+ D P W SKW+CL V WD+ +R N+VSPWE
Sbjct: 282 MRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWE 340
Query: 60 IEP-SGSASIPNNLMAASLKRTR 81
IEP S ++P ++M + KR R
Sbjct: 341 IEPFVNSENVPKSVMLKN-KRPR 362
>AT5G37020.1 | Symbols: ARF8, ATARF8 | auxin response factor 8 |
chr5:14630151-14634106 FORWARD LENGTH=811
Length = 811
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET++++ RR G I GI+D+D VRWP S W+ + V WD+ A R RVS WE
Sbjct: 295 MRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWE 354
Query: 60 IEPSGSASIPNNLMAASLKR 79
IEP + + +L LKR
Sbjct: 355 IEPLTTFPMYPSLFPLRLKR 374
>AT5G37020.2 | Symbols: ARF8 | auxin response factor 8 |
chr5:14630151-14633916 FORWARD LENGTH=773
Length = 773
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET++++ RR G I GI+D+D VRWP S W+ + V WD+ A R RVS WE
Sbjct: 295 MRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWE 354
Query: 60 IEPSGSASIPNNLMAASLKR 79
IEP + + +L LKR
Sbjct: 355 IEPLTTFPMYPSLFPLRLKR 374
>AT1G30330.2 | Symbols: ARF6 | auxin response factor 6 |
chr1:10686125-10690036 REVERSE LENGTH=935
Length = 935
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET++++ RR G I GI D+DP RW S W+ + V WD+ A R RVS WE
Sbjct: 298 MRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWE 357
Query: 60 IEPSGSASIPNNLMAASLKRT-RIGLPSTQLEFPVPNGMGASDFGESL 106
IEP + + + LKR GLPS +G+ D G S+
Sbjct: 358 IEPLTTFPMYPSPFPLRLKRPWPPGLPSF-------HGLKEDDMGMSM 398
>AT1G30330.1 | Symbols: ARF6 | auxin response factor 6 |
chr1:10686125-10690036 REVERSE LENGTH=933
Length = 933
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET++++ RR G I GI D+DP RW S W+ + V WD+ A R RVS WE
Sbjct: 296 MRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWE 355
Query: 60 IEPSGSASIPNNLMAASLKRT-RIGLPSTQLEFPVPNGMGASDFGESL 106
IEP + + + LKR GLPS +G+ D G S+
Sbjct: 356 IEPLTTFPMYPSPFPLRLKRPWPPGLPSF-------HGLKEDDMGMSM 396
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP |
Transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related |
chr5:7016704-7021504 REVERSE LENGTH=1164
Length = 1164
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET++ RR G + GI+D+DPVRW S+W+ L + WD+ A R +RVS W+
Sbjct: 295 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 354
Query: 60 IEP 62
IEP
Sbjct: 355 IEP 357
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | Transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related |
chr5:7016704-7021504 REVERSE LENGTH=1150
Length = 1150
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET++ RR G + GI+D+DPVRW S+W+ L + WD+ A R +RVS W+
Sbjct: 296 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 355
Query: 60 IEP 62
IEP
Sbjct: 356 IEP 358
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP |
Transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related |
chr5:7016704-7021504 REVERSE LENGTH=1165
Length = 1165
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWE 59
MRFRM FET++ RR G + GI+D+DPVRW S+W+ L + WD+ A R +RVS W+
Sbjct: 296 MRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWD 355
Query: 60 IEP 62
IEP
Sbjct: 356 IEP 358
>AT1G34390.1 | Symbols: ARF22 | auxin response factor 22 |
chr1:12556005-12559082 FORWARD LENGTH=598
Length = 598
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEI 60
RF MRFE DD +ERR G I+G++D P W S+W+ L V+WD+ + +R N+VSPWEI
Sbjct: 291 RFTMRFEGDDFSERRYFGTIIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEI 349
Query: 61 E---PSGSASIPNNLMAASLKRT-RIGLPSTQLEFPV 93
E P+ + P+ L L+ IG S+ L P+
Sbjct: 350 EHLMPALNVPRPSLLKNKRLREVNEIGSSSSHLLPPI 386
>AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 |
chr3:22888171-22891179 FORWARD LENGTH=602
Length = 602
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDD-LEATRNNRVSPWEI 60
RFRMRFE +++ ER G IVG D+ +WP SKW+ L V+WD+ R ++VSPWEI
Sbjct: 295 RFRMRFEGEESPERIFTGTIVGSGDLS-SQWPASKWRSLQVQWDEPTTVQRPDKVSPWEI 353
Query: 61 EP---SGSASIPNNLMAASLKRTRIGLPSTQLEFP 92
EP + S P + KR+R PS + P
Sbjct: 354 EPFLATSPISTPAQQPQSKCKRSRPIEPSVKTPAP 388
>AT1G35240.1 | Symbols: ARF20 | auxin response factor 20 |
chr1:12927457-12930523 REVERSE LENGTH=590
Length = 590
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 77/155 (49%), Gaps = 31/155 (20%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEI 60
RF MRFE DD +ERR G I+G+ D P W S+W+ L V+WD+ + +R N+VSPWEI
Sbjct: 291 RFTMRFEGDDFSERRYFGTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEI 349
Query: 61 EPSGSA-SIPNNLMAASLKRTR----IGLPSTQLEFPVPNGMGASDFGESLRFQKVLQGQ 115
E SA ++P + + + KR R G QL AS SLR++
Sbjct: 350 EHLMSALNVPRSSLLKN-KRLREVNEFGQEIGQLSV-------ASPMNTSLRYR------ 395
Query: 116 EISGVDTTFDGINAPSHQSYELRRCYPGSNYPGIS 150
DTT D +N PS L YP P ++
Sbjct: 396 -----DTTEDAMN-PSR----LLMSYPVQPMPKLN 420
>AT1G34410.1 | Symbols: ARF21 | auxin response factor 21 |
chr1:12577722-12580824 FORWARD LENGTH=606
Length = 606
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEI 60
RF MRFE DD +ERR G I+G++D P W S+W+ L V+WD+ + +R N+VSPWEI
Sbjct: 293 RFTMRFEGDDFSERRYFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEI 351
Query: 61 E 61
E
Sbjct: 352 E 352
>AT2G46530.2 | Symbols: ARF11 | auxin response factor 11 |
chr2:19105511-19108029 FORWARD LENGTH=514
Length = 514
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MR+RMRFE +++ ER G I+G D+ +WP SKW+ L ++WD+ + R N+VSPWE
Sbjct: 203 MRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWE 261
Query: 60 IEP-SGSASIPN 70
IEP S SA P
Sbjct: 262 IEPFSPSALTPT 273
>AT1G59750.2 | Symbols: ARF1 | auxin response factor 1 |
chr1:21980414-21984193 FORWARD LENGTH=662
Length = 662
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R +G IVG+ + W S+W+ L V+WD+ + R RVSPWE
Sbjct: 292 MRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWE 351
Query: 60 IEPSGSASIPNNLMAASLKRTR---IGLPSTQLEFPVPNGMGAS 100
+EP + S P++ + R GLPS P+G+ S
Sbjct: 352 LEPLVANSTPSSQPQPPQRNKRPRPPGLPSPATGPSGPDGVWKS 395
>AT2G46530.1 | Symbols: ARF11 | auxin response factor 11 |
chr2:19104993-19108029 FORWARD LENGTH=601
Length = 601
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MR+RMRFE +++ ER G I+G D+ +WP SKW+ L ++WD+ + R N+VSPWE
Sbjct: 290 MRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWE 348
Query: 60 IEP-SGSASIPN 70
IEP S SA P
Sbjct: 349 IEPFSPSALTPT 360
>AT1G59750.3 | Symbols: ARF1 | auxin response factor 1 |
chr1:21980414-21984193 FORWARD LENGTH=665
Length = 665
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R +G IVG+ + W S+W+ L V+WD+ + R RVSPWE
Sbjct: 292 MRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWE 351
Query: 60 IEPSGSASIPNNLMAASLKRTR---IGLPS 86
+EP + S P++ + R GLPS
Sbjct: 352 LEPLVANSTPSSQPQPPQRNKRPRPPGLPS 381
>AT1G59750.1 | Symbols: ARF1 | auxin response factor 1 |
chr1:21980414-21984193 FORWARD LENGTH=665
Length = 665
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R +G IVG+ + W S+W+ L V+WD+ + R RVSPWE
Sbjct: 292 MRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWE 351
Query: 60 IEPSGSASIPNNLMAASLKRTR---IGLPS 86
+EP + S P++ + R GLPS
Sbjct: 352 LEPLVANSTPSSQPQPPQRNKRPRPPGLPS 381
>AT1G59750.4 | Symbols: ARF1 | auxin response factor 1 |
chr1:21980414-21984193 FORWARD LENGTH=660
Length = 660
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MRF+MRFE ++A E+R +G IVG+ + W S+W+ L V+WD+ + R RVSPWE
Sbjct: 292 MRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWE 351
Query: 60 IEPSGSASIPNN 71
+EP + S P++
Sbjct: 352 LEPLVANSTPSS 363
>AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 |
chr2:19105112-19108029 FORWARD LENGTH=622
Length = 622
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 1 MRFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEAT-RNNRVSPWE 59
MR+RMRFE +++ ER G I+G D+ +WP SKW+ L ++WD+ + R N+VSPWE
Sbjct: 311 MRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWE 369
Query: 60 IEP-SGSASIPN 70
IEP S SA P
Sbjct: 370 IEPFSPSALTPT 381
>AT1G35540.1 | Symbols: ARF14 | auxin response factor 14 |
chr1:13108634-13111700 FORWARD LENGTH=605
Length = 605
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEI 60
RF MRFE DD +ERR G I+G++D P W S+W+ L V+WD+ + R N+VSPW+I
Sbjct: 293 RFTMRFEGDDFSERRSFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDI 351
Query: 61 E 61
E
Sbjct: 352 E 352
>AT1G35520.1 | Symbols: ARF15 | auxin response factor 15 |
chr1:13082819-13085830 REVERSE LENGTH=598
Length = 598
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEI 60
RF MRFE DD +ERR G I+G+++ P W S W+ L V+WD+ + R N+VSPWEI
Sbjct: 298 RFTMRFEGDDLSERRYFGTIIGVSNFSP-HWKCSDWRSLEVQWDEFASFLRPNKVSPWEI 356
Query: 61 E 61
E
Sbjct: 357 E 357
>AT1G34170.1 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 |
chr1:12444265-12446764 REVERSE LENGTH=505
Length = 505
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEI 60
RFRM+FE D +E+R G I+G+ D+ P W S+W+ L V+WD+L R N+VSPW+I
Sbjct: 293 RFRMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDI 351
Query: 61 EPSGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGASDFGE 104
E +S ++ +SLK+ + L ++ + N + G+
Sbjct: 352 EHLIPSS---DISQSSLKKKKHWLQLNEIGATLSNLWTCQEIGQ 392
>AT1G34310.1 | Symbols: ARF12 | auxin response factor 12 |
chr1:12508548-12511520 REVERSE LENGTH=593
Length = 593
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 2 RFRMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEATRN-NRVSPWEI 60
RF MR E DD +ERRC G I+G++D P W S+W+ L V+WD+ + +VSPW+I
Sbjct: 293 RFTMRLEGDDFSERRCFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDI 351
Query: 61 EPSGSA-SIPNNLMAASLKRTR----IGLPSTQLEFPV 93
E A ++P + + + KR R IG S+ L P+
Sbjct: 352 EHLMPAINVPRSFLLKN-KRLREVNEIGSSSSHLLPPI 388
>AT2G28350.1 | Symbols: ARF10 | auxin response factor 10 |
chr2:12114331-12116665 FORWARD LENGTH=693
Length = 693
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1 MRFRMRFETDDAAE-RRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEATRN-NRVSPW 58
MRF+M FET+D++ G + + DP+RWP S W+ L V WD+ + +N RVSPW
Sbjct: 319 MRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPW 378
Query: 59 EIEPSGSASIPNNLMAASLKRTRIGLPSTQLEFP 92
+E +++P ++ R +I +P EFP
Sbjct: 379 LVEL--VSNMPTIHLSPFSPRKKIRIPQP-FEFP 409
>AT1G34170.2 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 |
chr1:12444265-12446764 REVERSE LENGTH=479
Length = 479
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 4 RMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEIEP 62
RM+FE D +E+R G I+G+ D+ P W S+W+ L V+WD+L R N+VSPW+IE
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 63 SGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGASDFGE 104
+S ++ +SLK+ + L ++ + N + G+
Sbjct: 328 LIPSS---DISQSSLKKKKHWLQLNEIGATLSNLWTCQEIGQ 366
>AT1G34170.3 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 |
chr1:12443578-12446764 REVERSE LENGTH=546
Length = 546
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 4 RMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEA-TRNNRVSPWEIEP 62
RM+FE D +E+R G I+G+ D+ P W S+W+ L V+WD+L R N+VSPW+IE
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 63 SGSASIPNNLMAASLKRTRIGLPSTQLEFPVPNGMGASDFGE 104
+S ++ +SLK+ + L ++ + N + G+
Sbjct: 328 LIPSS---DISQSSLKKKKHWLQLNEIGATLSNLWTCQEIGQ 366
>AT4G30080.1 | Symbols: ARF16 | auxin response factor 16 |
chr4:14703369-14705564 REVERSE LENGTH=670
Length = 670
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 1 MRFRMRFETDDAAERRC-AGLIVGITDVDPVRWPGSKWKCLLVRWDDLEATRN-NRVSPW 58
MRF+M FET+D++ G + + DP+RWP S W+ L V WD+ + +N RV+PW
Sbjct: 321 MRFKMAFETEDSSRISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPW 380
Query: 59 EIEPSGSASIPNNLMAASLKRTRIGLP 85
+E + P L + S R ++ LP
Sbjct: 381 LVELVSNVH-PIPLTSFSPPRKKMRLP 406