Miyakogusa Predicted Gene

Lj4g3v0484790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0484790.1 Non Chatacterized Hit- tr|I1HE06|I1HE06_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,42.99,5e-17,seg,NULL; FHA,Forkhead-associated (FHA) domain; no
description,Forkhead-associated (FHA) domain; FHA,CUFF.47413.1
         (466 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14490.1 | Symbols:  | SMAD/FHA domain-containing protein  | ...   137   2e-32
AT3G02400.1 | Symbols:  | SMAD/FHA domain-containing protein  | ...   126   3e-29

>AT4G14490.1 | Symbols:  | SMAD/FHA domain-containing protein  |
           chr4:8332414-8333574 REVERSE LENGTH=386
          Length = 386

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 83/106 (78%), Gaps = 1/106 (0%)

Query: 1   MEPPSLRLVILQGPREGETLDFRPGSAIRIGRVIRGNTLPIKDSGISSKHLSILTESGKW 60
           M  PSLRLV ++GPREG+ LD++PGS IR+GR++RGN + IKD+GIS+KHL I ++SG W
Sbjct: 1   MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 60

Query: 61  VLRDLDSSNGTVLDGTKVAPPHTPVDVNDGSTIKIGELTSILVTFL 106
           V++DL SSNGT+L+ +    P T V++ DG  IK+GE TSILV F+
Sbjct: 61  VIQDLGSSNGTLLN-SNALDPETSVNLGDGDVIKLGEYTSILVNFV 105



 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 31/170 (18%)

Query: 297 EKVEGPKIKRVTRSVKNKRSEVEPSDSRIGNLDAVEEKVEEPENKWVTGXXXXXXXXXXX 356
           EKVE  K KR+TR+ ++K+ ++   DS +  LD V  +  + + K               
Sbjct: 248 EKVETLKEKRITRATRSKKIDI-VGDSYL-ELDMVLNRARKNKGK--------------- 290

Query: 357 XPQNSSLEPRVENVEKKKTRGGAKSGELQEECNGKENGDGTEKEKLNGDENLPDLEKLSL 416
                          KK  +   KS E  E  +  E G     E+   +E   DL K++L
Sbjct: 291 --------------NKKADQKPLKSFENDEVTDSGEQGLSCHVEEDMNNELDTDLRKMTL 336

Query: 417 GEWFDFLEVHLPKQIIDATEEMFDSMRQKAERLREYIMMQKNHQVEVPAV 466
           G  F FLE HL K+II  TE M + MR K +R+REYI  Q+  Q +    
Sbjct: 337 GALFSFLEGHLSKEIIHKTENMIEPMRSKTQRVREYISDQRKVQAKACMC 386


>AT3G02400.1 | Symbols:  | SMAD/FHA domain-containing protein  |
           chr3:489830-491587 FORWARD LENGTH=585
          Length = 585

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 78/105 (74%), Gaps = 1/105 (0%)

Query: 1   MEPPSLRLVILQGPREGETLDFRPGSAIRIGRVIRGNTLPIKDSGISSKHLSILTESGKW 60
           M PP L+L   QGPR G++L F+PGS IRIGR++RGN + IKD+GIS+KHL I+++S  W
Sbjct: 1   MVPPLLKLDFTQGPRAGDSLGFKPGSTIRIGRIVRGNEIAIKDAGISTKHLRIVSDSENW 60

Query: 61  VLRDLDSSNGTVLDGTKVAPPHTPVDVNDGSTIKIGELTSILVTF 105
           ++ DL SSNGT+L+   +    TPV+++ G  IK+GE TSILV F
Sbjct: 61  IIHDLGSSNGTILNSDTI-DSDTPVNLSHGDEIKLGEYTSILVNF 104



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 411 LEKLSLGEWFDFLEVHLPKQIIDATEEMFDSMRQKAERLREYIMMQK 457
           LEK+ L EWFD +EV LPKQ I+ TE+M + MR K+ R+ ++I  QK
Sbjct: 535 LEKMKLREWFDAIEVQLPKQTIEETEKMIEPMRSKSMRVHKHIAEQK 581