Miyakogusa Predicted Gene

Lj4g3v0484690.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0484690.3 Non Chatacterized Hit- tr|B4FIA3|B4FIA3_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,58.89,4e-17,DUF2930,Protein of unknown function
DUF2930,CUFF.47407.3
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52110.2 | Symbols: HCF208 | Protein of unknown function (DUF...   246   1e-65
AT5G52110.1 | Symbols: HCF208, CCB2 | Protein of unknown functio...   246   1e-65

>AT5G52110.2 | Symbols: HCF208 | Protein of unknown function
           (DUF2930) | chr5:21172159-21173953 REVERSE LENGTH=275
          Length = 275

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 159/218 (72%), Gaps = 6/218 (2%)

Query: 7   ICFKPCVPSKVLYPRTSSTKFTTMVRASLQDPQPPNTSQQQQLNLSVLRFTLGIPGFDES 66
           IC  P  P   L PR   +   T + A  ++  P + +  QQLNLSVLRFT GIPGFDES
Sbjct: 5   ICNFPFHPKFALQPRAQRS---TRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDES 61

Query: 67  YLPRWIGYGFGSLLLLNHFLGSDSATVTPAQLSTEVLGMSLASFSIVLPYLGKFLKGAQP 126
           YLPRWIGYGFGSLLLLNHF  S SA ++ +Q+ +E LG+SLA+FSI LPY+GKFLKG+  
Sbjct: 62  YLPRWIGYGFGSLLLLNHF--SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGS-V 118

Query: 127 VDRTTLPDGTQQIFVMSTDIVDGLKEDLAWASYILLRNSNAIAALIFIQGDICARGYWNI 186
           V++ +LP+  +Q+FV+S++I D LKEDLAWA+Y+LLRN++ IA LI +QG++C RGYWN 
Sbjct: 119 VEQRSLPEEGEQVFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNC 178

Query: 187 TDDSSTEILLGFFKKKVENARLYDLKDTLYFPQDAGSG 224
            D  S   L  +FKKKV+   L D+K+TLYFPQ AGS 
Sbjct: 179 PDQMSKAQLHDWFKKKVDEIGLADVKETLYFPQYAGSA 216


>AT5G52110.1 | Symbols: HCF208, CCB2 | Protein of unknown function
           (DUF2930) | chr5:21172653-21173953 REVERSE LENGTH=275
          Length = 275

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 159/218 (72%), Gaps = 6/218 (2%)

Query: 7   ICFKPCVPSKVLYPRTSSTKFTTMVRASLQDPQPPNTSQQQQLNLSVLRFTLGIPGFDES 66
           IC  P  P   L PR   +   T + A  ++  P + +  QQLNLSVLRFT GIPGFDES
Sbjct: 5   ICNFPFHPKFALQPRAQRS---TRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDES 61

Query: 67  YLPRWIGYGFGSLLLLNHFLGSDSATVTPAQLSTEVLGMSLASFSIVLPYLGKFLKGAQP 126
           YLPRWIGYGFGSLLLLNHF  S SA ++ +Q+ +E LG+SLA+FSI LPY+GKFLKG+  
Sbjct: 62  YLPRWIGYGFGSLLLLNHF--SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGS-V 118

Query: 127 VDRTTLPDGTQQIFVMSTDIVDGLKEDLAWASYILLRNSNAIAALIFIQGDICARGYWNI 186
           V++ +LP+  +Q+FV+S++I D LKEDLAWA+Y+LLRN++ IA LI +QG++C RGYWN 
Sbjct: 119 VEQRSLPEEGEQVFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNC 178

Query: 187 TDDSSTEILLGFFKKKVENARLYDLKDTLYFPQDAGSG 224
            D  S   L  +FKKKV+   L D+K+TLYFPQ AGS 
Sbjct: 179 PDQMSKAQLHDWFKKKVDEIGLADVKETLYFPQYAGSA 216