Miyakogusa Predicted Gene

Lj4g3v0473650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0473650.1 tr|Q5QMQ5|Q5QMQ5_ORYSJ Homeobox transcription
factor-like OS=Oryza sativa subsp. japonica
GN=P0007F0,65.08,5e-17,seg,NULL; coiled-coil,NULL;
Homeodomain,Homeodomain; Homeodomain-like,Homeodomain-like;
Homeobox,Hom,NODE_60549_length_1598_cov_46.536922.path1.1
         (428 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460 ...   210   2e-54
AT5G44180.2 | Symbols:  | Homeodomain-like transcriptional regul...   171   1e-42
AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional regul...   171   1e-42
AT4G03250.1 | Symbols:  | Homeodomain-like superfamily protein |...    70   4e-12

>AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460
           FORWARD LENGTH=1705
          Length = 1705

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 158/417 (37%), Positives = 211/417 (50%), Gaps = 61/417 (14%)

Query: 4   EAGSEGDSNRKRGSADDNSDENRNEGSNSKIANSNDGQGKPKRQMKTPFQLETLEKAYAL 63
           E GS+G+  + R    D ++ N  +      ++S DG+ KPKRQMKTPFQLETLEK Y+ 
Sbjct: 2   EMGSDGEDQKIRSVVGD-ANLNNKKKKIDNNSSSKDGRVKPKRQMKTPFQLETLEKVYSE 60

Query: 64  DKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEMALKKQPQKVEVEPLPDSPVDNL 123
           +K+PSE  R ELS+KL L DRQLQMWFCHRRLKDKK+     +P K  V  +  + V+ L
Sbjct: 61  EKYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKKD-GQSNKPVKSSVAAVQSASVNEL 119

Query: 124 RLG----PELXXXXXXXXXXXXXPF-------------TRLEPRNGVSRGMPGYYESPQA 166
                  PE              P+             +R E     + G P  YES  +
Sbjct: 120 PAAAGSVPEQDSRSDSGSESGCSPYSNSRRNFASGSSSSRAELDEYETMGKPS-YESRLS 178

Query: 167 VMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAFGTPIAVTEHQKLPSPSYDSKIYG 226
            M  RAI C+EAQLGEPLRDDGP LG+EFDPLPPGAFGTPIA+ +H   P   Y+S +Y 
Sbjct: 179 TMVHRAIVCIEAQLGEPLRDDGPILGMEFDPLPPGAFGTPIAMQKHLLHP---YESDLYE 235

Query: 227 RHDVRTNK--AMAKTFQ--------SRSRPDAFGQFRQSHLHDLMEDPARN--PSVAPVL 274
           RHD R  +  A A++F         S   P+ + ++ ++H   +  + AR+   S     
Sbjct: 236 RHDPRPRRSHAAARSFHEQQSLDDPSSFTPNMYERYSENHARGMDYEVARSRISSFMHAN 295

Query: 275 EQLPRIHVTQGQSSRVRLSSQQDRQGSSFQSPPLPDDVNPLAELYTNITNGGMNSHFT-- 332
             +PR +VT G +SR   +SQQD         P P            I +      F   
Sbjct: 296 GPVPRSYVTPGHASRNCSTSQQDM--------PSP------------IESAHHGDRFLLE 335

Query: 333 -DHQMVGPENAYALPSGQLLHDNAVRIDRKRKSDDPRSAKDVEAHEIKIRKELEKQE 388
            D  ++G E+ Y LP G      +  + RK K +D R  +  E  E    K+LEK E
Sbjct: 336 KDSSVLGTEDPYLLPDGV---RKSSDVHRKGKINDGRLGRGSETRENHGPKDLEKLE 389


>AT5G44180.2 | Symbols:  | Homeodomain-like transcriptional
           regulator | chr5:17783172-17789872 FORWARD LENGTH=1507
          Length = 1507

 Score =  171 bits (432), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 190/379 (50%), Gaps = 47/379 (12%)

Query: 29  GSNSKIANSNDGQGKPKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQM 88
           GS         G+ K KR+MKT  QLE LE  Y+ + +PSE +R +LS KL L DRQLQM
Sbjct: 4   GSEKTTPEGCGGESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQM 63

Query: 89  WFCHRRLKDKKEMALKKQPQKVEVEPLP----DSPVD--NLRLGPELXXXXXXXXXXXXX 142
           WFCHRRLK++K     K+ +K  V P      + PV+  +L  G EL             
Sbjct: 64  WFCHRRLKERKSTTPSKRQRKELVTPTAMESWEPPVNAGDLVAGNELD------------ 111

Query: 143 PFTRLEPRNGVSRGMPGY--YESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPP 200
             +R   R     G+     +  P +  E RAI  VEAQLGE LRD+GP LG+EFDPLPP
Sbjct: 112 --SRRAARGSGGSGVTVVRRFNEPSSA-EVRAIGYVEAQLGERLRDNGPVLGMEFDPLPP 168

Query: 201 GAFGTPIAVTEHQKLPSPSYDSKIYGRHDVRTNKAMAKTFQSRSRPDAFGQFRQSHLHDL 260
           GAFG PI +  H+K    ++++ IY R DV+  K   +  +           R  H   +
Sbjct: 169 GAFGMPIEMPSHRKATRQAFETNIYVRSDVKPIKDHVRPIREYQFIPELPSSRTDHSERV 228

Query: 261 MEDPARNPSVAPVLEQLPRIHVTQG----------QSSRVRLSSQQDRQGSSFQSPPLPD 310
              P+ +  V P+   + R+               Q   + L++ Q + G  + SP L +
Sbjct: 229 --SPSHHFGV-PLDGSVMRVSAVSAGHRDDYKISPQIPNLNLATHQGKPGHVY-SPNLVE 284

Query: 311 DVNPLAELYTNITNGGMNSHFTDHQM-VGPENAYALPSGQLLHDNAVRIDRKRKSDDPRS 369
             +P  + Y +      +  F   +  VG E+           D+A++++R RK+++ R 
Sbjct: 285 YDSPYQKSYMDTAAQVHDDPFVKSEREVGNEDE---------DDDALQLERHRKNEEARI 335

Query: 370 AKDVEAHEIKIRKELEKQE 388
           A++VEAHE +IR+ELEKQ+
Sbjct: 336 AREVEAHEKRIRRELEKQD 354


>AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional
           regulator | chr5:17783172-17789872 FORWARD LENGTH=1694
          Length = 1694

 Score =  171 bits (432), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 190/379 (50%), Gaps = 47/379 (12%)

Query: 29  GSNSKIANSNDGQGKPKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQM 88
           GS         G+ K KR+MKT  QLE LE  Y+ + +PSE +R +LS KL L DRQLQM
Sbjct: 4   GSEKTTPEGCGGESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQM 63

Query: 89  WFCHRRLKDKKEMALKKQPQKVEVEPLP----DSPVD--NLRLGPELXXXXXXXXXXXXX 142
           WFCHRRLK++K     K+ +K  V P      + PV+  +L  G EL             
Sbjct: 64  WFCHRRLKERKSTTPSKRQRKELVTPTAMESWEPPVNAGDLVAGNELD------------ 111

Query: 143 PFTRLEPRNGVSRGMPGY--YESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPP 200
             +R   R     G+     +  P +  E RAI  VEAQLGE LRD+GP LG+EFDPLPP
Sbjct: 112 --SRRAARGSGGSGVTVVRRFNEPSSA-EVRAIGYVEAQLGERLRDNGPVLGMEFDPLPP 168

Query: 201 GAFGTPIAVTEHQKLPSPSYDSKIYGRHDVRTNKAMAKTFQSRSRPDAFGQFRQSHLHDL 260
           GAFG PI +  H+K    ++++ IY R DV+  K   +  +           R  H   +
Sbjct: 169 GAFGMPIEMPSHRKATRQAFETNIYVRSDVKPIKDHVRPIREYQFIPELPSSRTDHSERV 228

Query: 261 MEDPARNPSVAPVLEQLPRIHVTQG----------QSSRVRLSSQQDRQGSSFQSPPLPD 310
              P+ +  V P+   + R+               Q   + L++ Q + G  + SP L +
Sbjct: 229 --SPSHHFGV-PLDGSVMRVSAVSAGHRDDYKISPQIPNLNLATHQGKPGHVY-SPNLVE 284

Query: 311 DVNPLAELYTNITNGGMNSHFTDHQM-VGPENAYALPSGQLLHDNAVRIDRKRKSDDPRS 369
             +P  + Y +      +  F   +  VG E+           D+A++++R RK+++ R 
Sbjct: 285 YDSPYQKSYMDTAAQVHDDPFVKSEREVGNEDE---------DDDALQLERHRKNEEARI 335

Query: 370 AKDVEAHEIKIRKELEKQE 388
           A++VEAHE +IR+ELEKQ+
Sbjct: 336 AREVEAHEKRIRRELEKQD 354


>AT4G03250.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:1425050-1427744 FORWARD LENGTH=507
          Length = 507

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 44/57 (77%)

Query: 45  KRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
           KR++KTP Q+  LE  Y   K+P+EE++ +L++++GL ++Q+  WFCHRRLKDK+ +
Sbjct: 22  KRKLKTPMQVMALENFYNEHKYPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRHV 78



 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query: 158 PGYYESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAF 203
           P  Y   +   E  AI  V+ QLG   ++DGP LGVEFDPLPPGAF
Sbjct: 187 PSGYLKVKGESENFAITAVKRQLGRQYQEDGPPLGVEFDPLPPGAF 232