Miyakogusa Predicted Gene

Lj4g3v0473370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0473370.1 Non Chatacterized Hit- tr|K4ATG2|K4ATG2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,53.49,3e-19,
,CUFF.47360.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23690.1 | Symbols:  | Polynucleotide adenylyltransferase fam...    92   9e-20
AT1G28090.2 | Symbols:  | Polynucleotide adenylyltransferase fam...    64   1e-11
AT1G28090.1 | Symbols:  | Polynucleotide adenylyltransferase fam...    64   1e-11
AT1G28090.3 | Symbols:  | Polynucleotide adenylyltransferase fam...    64   2e-11
AT3G48830.1 | Symbols:  | polynucleotide adenylyltransferase fam...    61   1e-10

>AT5G23690.1 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr5:7987664-7990466 FORWARD LENGTH=527
          Length = 527

 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 61/87 (70%), Gaps = 1/87 (1%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAGR-KFFSKQGRKTDFE 59
           MT  + +S+ M+ YPQAP SD+VFIPL +YL+A  IFDC++    R  F +KQG K ++ 
Sbjct: 437 MTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRIGFEAKQGSKIEYG 496

Query: 60  SLAHGDLQEVRHMLAMVVFDTLYPLHL 86
           SL  G   E+RH+ A VVFDT++PL+L
Sbjct: 497 SLNSGYFPEIRHVFARVVFDTVFPLNL 523


>AT1G28090.2 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9796045-9798891 FORWARD LENGTH=505
          Length = 505

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAG--RKFFSKQGRKTDF 58
           +  R  ++  M+ YPQAP SDMVF+   M  +   +F  +R +    R       R+ ++
Sbjct: 419 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 478

Query: 59  ESLAHGDLQEVRHMLAMVVFDTLYPL 84
           +SLA GD  E R + A +VFDT+YPL
Sbjct: 479 KSLALGDFHETRRVFARIVFDTIYPL 504


>AT1G28090.1 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9795826-9798891 FORWARD LENGTH=541
          Length = 541

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAG--RKFFSKQGRKTDF 58
           +  R  ++  M+ YPQAP SDMVF+   M  +   +F  +R +    R       R+ ++
Sbjct: 455 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 514

Query: 59  ESLAHGDLQEVRHMLAMVVFDTLYPL 84
           +SLA GD  E R + A +VFDT+YPL
Sbjct: 515 KSLALGDFHETRRVFARIVFDTIYPL 540


>AT1G28090.3 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9796236-9798891 FORWARD LENGTH=478
          Length = 478

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAG--RKFFSKQGRKTDF 58
           +  R  ++  M+ YPQAP SDMVF+   M  +   +F  +R +    R       R+ ++
Sbjct: 392 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 451

Query: 59  ESLAHGDLQEVRHMLAMVVFDTLYPL 84
           +SLA GD  E R + A +VFDT+YPL
Sbjct: 452 KSLALGDFHETRRVFARIVFDTIYPL 477


>AT3G48830.1 | Symbols:  | polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:18103272-18110216 FORWARD LENGTH=881
          Length = 881

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 37/59 (62%)

Query: 1   MTTRHVVSQVMADYPQAPDSDMVFIPLGMYLKAVSIFDCLRARAGRKFFSKQGRKTDFE 59
           MT    +S+ MA YPQAP SDMVFIPL +YL A  IF+C++    + F  KQ  K + E
Sbjct: 432 MTDGRFISKAMAAYPQAPYSDMVFIPLQLYLDARRIFECVKENGQKGFVPKQDSKREPE 490