Miyakogusa Predicted Gene

Lj4g3v0473340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0473340.1 Non Chatacterized Hit- tr|I3SNA5|I3SNA5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
no description,Nucleic acid-binding, OB-fold; Nucleic acid-binding
proteins,Nucleic acid-b,CUFF.47358.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33845.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   173   4e-44
AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   166   8e-42
AT4G28440.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   159   6e-40
AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   152   7e-38
AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   151   2e-37
AT1G10590.2 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   151   2e-37
AT1G10590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   151   2e-37

>AT2G33845.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:14317781-14318712 FORWARD LENGTH=182
          Length = 182

 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 94/115 (81%)

Query: 24  KRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDETGAI 83
           K+KPVF KVDQLKPGT+GHTL  KV+  ++V QK   +SS +LRP  I+E L+GDET  I
Sbjct: 52  KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACI 111

Query: 84  IFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           +FTARN+QVELMKPG TV LRNAKIDMFKGSMRLAVDKWGRIE TEPA   VKED
Sbjct: 112 LFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKED 166


>AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:8400638-8401171 FORWARD LENGTH=137
          Length = 137

 Score =  166 bits (419), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 1/118 (0%)

Query: 21  KPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDET 80
           K   +KP FTKVDQL+PGT+GH +  K++S+  VLQKGR    Q  R   I+E ++GDET
Sbjct: 6   KAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQ-ARQLRISECIVGDET 64

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKED 138
           G I+FTARN+QV+LMK G+TV LRNAKIDM+KGSMRLAVDKWGR+EVTEPA F+VKED
Sbjct: 65  GVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKED 122


>AT4G28440.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr4:14060054-14060970 FORWARD LENGTH=153
          Length = 153

 Score =  159 bits (403), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 95/121 (78%), Gaps = 5/121 (4%)

Query: 23  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVL---QKGRPSSSQNL--RPTLIAESLIG 77
            KRKPVF KV+QLKPGT GHTL  KV+ ++ V+   +K RP+SS +   +P+ I E LIG
Sbjct: 16  VKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG 75

Query: 78  DETGAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKE 137
           DETG I+FTARN+QV+LMKPG TVILRN++IDMFKG+MRL VDKWGRIE T  A F VKE
Sbjct: 76  DETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKE 135

Query: 138 D 138
           D
Sbjct: 136 D 136


>AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:958759-959609 FORWARD LENGTH=143
          Length = 143

 Score =  152 bits (385), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 89/114 (78%), Gaps = 2/114 (1%)

Query: 24  KRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSS--SQNLRPTLIAESLIGDETG 81
           KRKPVF KVDQLKPGT+GHTL+ KVL S+ V    R SS   Q +    IAE LIGD+TG
Sbjct: 14  KRKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTG 73

Query: 82  AIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEV 135
            I+FTARN+QV+LMK G TVILRNAKID+FK +MR+AVD+WGRIE+T P  FEV
Sbjct: 74  CILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEV 127


>AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3503033 REVERSE LENGTH=153
          Length = 153

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 94/119 (78%), Gaps = 4/119 (3%)

Query: 23  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKG--RPSSSQNLRPTLIAESLIGDET 80
           A RKPVFTKV++L+PGTNGH+L  KV+++  V+Q+G  RP   Q+ R   IAE L+GDET
Sbjct: 21  ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQS-RQMRIAECLVGDET 79

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVT-EPAKFEVKED 138
           G IIFTARN+QV++MK G+ V LRNAKIDM+KGSMRLAVD+WGR+EV  EP    VK+D
Sbjct: 80  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDD 138


>AT1G10590.2 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3502991 REVERSE LENGTH=139
          Length = 139

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 94/119 (78%), Gaps = 4/119 (3%)

Query: 23  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKG--RPSSSQNLRPTLIAESLIGDET 80
           A RKPVFTKV++L+PGTNGH+L  KV+++  V+Q+G  RP   Q+ R   IAE L+GDET
Sbjct: 7   ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQS-RQMRIAECLVGDET 65

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVT-EPAKFEVKED 138
           G IIFTARN+QV++MK G+ V LRNAKIDM+KGSMRLAVD+WGR+EV  EP    VK+D
Sbjct: 66  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDD 124


>AT1G10590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:3502324-3502991 REVERSE LENGTH=139
          Length = 139

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 94/119 (78%), Gaps = 4/119 (3%)

Query: 23  AKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKG--RPSSSQNLRPTLIAESLIGDET 80
           A RKPVFTKV++L+PGTNGH+L  KV+++  V+Q+G  RP   Q+ R   IAE L+GDET
Sbjct: 7   ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQS-RQMRIAECLVGDET 65

Query: 81  GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVT-EPAKFEVKED 138
           G IIFTARN+QV++MK G+ V LRNAKIDM+KGSMRLAVD+WGR+EV  EP    VK+D
Sbjct: 66  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDD 124