Miyakogusa Predicted Gene

Lj4g3v0472820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0472820.1 Non Chatacterized Hit- tr|I3SPP4|I3SPP4_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,76.92,6e-17,SBP,Transcription factor, SBP-box; seg,NULL; SBT
domain,Transcription factor, SBP-box; PROKAR_LIPOPR,gene.g52482.t1.1
         (171 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20980.1 | Symbols: SPL14, FBR6, SPL1R2, ATSPL14 | squamosa p...    47   5e-06

>AT1G20980.1 | Symbols: SPL14, FBR6, SPL1R2, ATSPL14 | squamosa
           promoter binding protein-like 14 | chr1:7325042-7328933
           FORWARD LENGTH=1035
          Length = 1035

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 72  KRGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKV 106
           + GS GG+   P CQV+NC  DLS AK YHRRHKV
Sbjct: 109 RSGSPGGNY--PMCQVDNCTEDLSHAKDYHRRHKV 141