Miyakogusa Predicted Gene

Lj4g3v0462750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0462750.1 tr|I3S397|I3S397_LOTJA 40S ribosomal protein S6
OS=Lotus japonicus PE=2 SV=1,98.47,0,Ribosomal_S6e,Ribosomal protein
S6e; seg,NULL; 40S RIBOSOMAL PROTEIN S6,Ribosomal protein S6e;
RIBOS,CUFF.47375.1
         (197 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10360.1 | Symbols: EMB3010, RPS6B | Ribosomal protein S6e | ...   336   8e-93
AT4G31700.1 | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr4...   334   2e-92
AT5G10360.2 | Symbols: EMB3010 | Ribosomal protein S6e | chr5:32...   223   5e-59
AT4G31700.2 | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr4...   213   6e-56

>AT5G10360.1 | Symbols: EMB3010, RPS6B | Ribosomal protein S6e |
           chr5:3258734-3260142 REVERSE LENGTH=249
          Length = 249

 Score =  336 bits (861), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 166/197 (84%), Positives = 171/197 (86%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDD KLRAF+DKR+SQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           +DLPGLTD EKPRMRGPKRASKIRKLFNL K+DDVRKYVNTYRR FT K GKKVSKAPKI
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>AT4G31700.1 | Symbols: RPS6, RPS6A | ribosomal protein S6 |
           chr4:15346306-15347714 REVERSE LENGTH=250
          Length = 250

 Score =  334 bits (857), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/195 (84%), Positives = 169/195 (86%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDD KLRAF+DKRISQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           NDLPGLTD EKPRMRGPKRASKIRKLFNL K+DDVR YVNTYRR FT K GK+VSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKI 180

Query: 181 QRLVTPLTLQRKRAR 195
           QRLVTPLTLQRKRAR
Sbjct: 181 QRLVTPLTLQRKRAR 195


>AT5G10360.2 | Symbols: EMB3010 | Ribosomal protein S6e |
           chr5:3258734-3260142 REVERSE LENGTH=197
          Length = 197

 Score =  223 bits (569), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 125/197 (63%), Gaps = 52/197 (26%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFN+ANPTTGCQKKLEIDDD KLRAF+DKR+SQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKG- 119

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
                                                              KKVSKAPKI
Sbjct: 120 ---------------------------------------------------KKVSKAPKI 128

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 129 QRLVTPLTLQRKRARIA 145


>AT4G31700.2 | Symbols: RPS6, RPS6A | ribosomal protein S6 |
           chr4:15346306-15347075 REVERSE LENGTH=188
          Length = 188

 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/133 (80%), Positives = 110/133 (82%)

Query: 63  MKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGDND 122
           MKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+ND
Sbjct: 1   MKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGEND 60

Query: 123 LPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKIQR 182
           LPGLTD EKPRMRGPKRASKIRKLFNL K+DDVR YVNTYRR FT K GK+VSKAPKIQR
Sbjct: 61  LPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQR 120

Query: 183 LVTPLTLQRKRAR 195
           LVTPLTLQRKRAR
Sbjct: 121 LVTPLTLQRKRAR 133