Miyakogusa Predicted Gene

Lj4g3v0462600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0462600.1 Non Chatacterized Hit- tr|I1KLL8|I1KLL8_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,86.01,0,30S RIBOSOMAL
PROTEIN S5P,NULL; RIBOSOMAL S SUBUNIT,Ribosomal protein S5; seg,NULL;
rpsE_bact: ribos,CUFF.47321.1
         (293 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein | ...   242   2e-64
AT1G64880.1 | Symbols:  | Ribosomal protein S5 family protein | ...    51   8e-07

>AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr2:14300925-14302352 REVERSE LENGTH=303
          Length = 303

 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/177 (70%), Positives = 135/177 (76%)

Query: 117 SGVSVLGNDIHVMDSKAKKDTGFGSGVKKEKVRDGFEERVVQVRRITKVVKGGKQLKFRX 176
           SG S+LG DI+VMDSK KK +G G   KK+K+RDGFEERVVQVRR+TKVVKGGKQLKFR 
Sbjct: 112 SGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRA 171

Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARRNIVSVPMTKYLTFPHRSDGDYGAAKV 236
                                         +ARRNIV VPMTKY TFPHRS+GDYGAAKV
Sbjct: 172 IVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKV 231

Query: 237 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFR 293
           MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+MRQFR
Sbjct: 232 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFR 288


>AT1G64880.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr1:24105713-24108780 FORWARD LENGTH=515
          Length = 515

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 57/138 (41%)

Query: 149 RDGFEERVVQVRRITKVVKGGKQLKFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNA 208
           R G++  V+ V+++ KV KGG+  ++                                  
Sbjct: 355 RKGYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKC 414

Query: 209 RRNIVSVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGK 268
            +N+  V   +  T  H     Y   K+ L PA   TG+ AG  V+ +L +AG +N   K
Sbjct: 415 FQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSK 474

Query: 269 QLGSNNALNNARATVVAV 286
            +GS N+ N  +A + A+
Sbjct: 475 VIGSRNSYNTVKAVLKAL 492