Miyakogusa Predicted Gene

Lj4g3v0461350.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0461350.4 Non Chatacterized Hit- tr|I3SQK6|I3SQK6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,AIM24,Mitochondrial biogenesis protein AIM24; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; TRAP-,CUFF.47377.4
         (230 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47420.1 | Symbols:  | Tryptophan RNA-binding attenuator prot...   361   e-100
AT4G17420.1 | Symbols:  | Tryptophan RNA-binding attenuator prot...   339   8e-94
AT4G17420.3 | Symbols:  | Tryptophan RNA-binding attenuator prot...   291   2e-79
AT4G17420.2 | Symbols:  | Tryptophan RNA-binding attenuator prot...   267   5e-72

>AT5G47420.1 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr5:19233013-19234838 FORWARD LENGTH=282
          Length = 282

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/231 (74%), Positives = 201/231 (87%), Gaps = 1/231 (0%)

Query: 1   MCFMSGSIEMENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPID 60
           MC+MSGSIEMEN Y PE EVG  QW+ GK+++S+VL N+G +DGFVGIAAPY ARILPID
Sbjct: 52  MCYMSGSIEMENTYTPEQEVGVLQWILGKSVSSVVLRNTGQNDGFVGIAAPYLARILPID 111

Query: 61  LAMFNGGILCQPDAFLCSVNDVKVSNTFDQRGQNVVA-GAERFLRQKLSGQGVAFILAGG 119
           LAMF G ILCQPDAFLCSV+DVKV N+ DQR +N+VA GAE FLRQ+LSGQG+AFILAGG
Sbjct: 112 LAMFGGEILCQPDAFLCSVHDVKVVNSVDQRARNIVAAGAEGFLRQRLSGQGLAFILAGG 171

Query: 120 SVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTALLTGPGIVFI 179
           SVVQK LE+GEV ++DVSCI A+T +++V+IKNN P RR +FGGD+VV A LTGPGIVFI
Sbjct: 172 SVVQKVLEVGEVFSIDVSCIAALTPSIDVRIKNNAPFRRALFGGDNVVMATLTGPGIVFI 231

Query: 180 QSLPFHRLSQRIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSLLLTDV 230
           QSLPFHRLSQRIAR+VTSPNMRENPK  IQIA+F  +AY VILSSL+LT+V
Sbjct: 232 QSLPFHRLSQRIARSVTSPNMRENPKLLIQIAIFAFLAYAVILSSLILTEV 282


>AT4G17420.1 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr4:9722544-9724443 REVERSE LENGTH=285
          Length = 285

 Score =  339 bits (870), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 166/234 (70%), Positives = 197/234 (84%), Gaps = 4/234 (1%)

Query: 1   MCFMSGSIEMENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPID 60
           MC+MSGSIEM+N Y PE EVG  QW+ GK+++SIVL N+G +DGFVGIAAP  ARILP+D
Sbjct: 52  MCYMSGSIEMDNTYTPEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLD 111

Query: 61  LAMFNGGILCQPDAFLCSVNDVKVSNTFDQ--RGQNV-VAGAERFLRQKLSGQGVAFILA 117
           LAMF G ILCQPDAFLCSV+DVKV NT  Q  R +N+  AGAE  LRQ+LSGQG+AFI+A
Sbjct: 112 LAMFGGDILCQPDAFLCSVHDVKVVNTVYQRHRARNIAAAGAEGVLRQRLSGQGLAFIIA 171

Query: 118 GGSVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIK-NNGPARRTMFGGDHVVTALLTGPGI 176
           GGSVVQKNLE+GEVL +DVSCI A+T ++N QIK N  P RR +FGGD+VVTA LTGPGI
Sbjct: 172 GGSVVQKNLEVGEVLTIDVSCIAALTPSINFQIKYNAAPVRRAVFGGDNVVTATLTGPGI 231

Query: 177 VFIQSLPFHRLSQRIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSLLLTDV 230
           VFIQSLPFHRLSQRIAR+VTSPNMRENP+  +QI +F  +AYVVI+SSL+LT++
Sbjct: 232 VFIQSLPFHRLSQRIARSVTSPNMRENPRLLVQIGLFIFLAYVVIVSSLILTEM 285


>AT4G17420.3 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr4:9722378-9724443 REVERSE LENGTH=273
          Length = 273

 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/224 (66%), Positives = 176/224 (78%), Gaps = 18/224 (8%)

Query: 1   MCFMSGSIEMENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPID 60
           MC+MSGSIEM+N Y PE EVG  QW+ GK+++SIVL N+G +DGFVGIAAP  ARILP+D
Sbjct: 52  MCYMSGSIEMDNTYTPEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLD 111

Query: 61  LAMFNGGILCQPDAFLCSVNDVKVSNTFDQ--RGQNV-VAGAERFLRQKLSGQGVAFILA 117
           LAMF G ILCQPDAFLCSV+DVKV NT  Q  R +N+  AGAE          G+AFI+A
Sbjct: 112 LAMFGGDILCQPDAFLCSVHDVKVVNTVYQRHRARNIAAAGAE----------GLAFIIA 161

Query: 118 GGSVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIK-NNGPARRTMFGGDHVVTALLTGPGI 176
           GGSVVQKNLE+GEVL +DVSCI A+T ++N QIK N  P RR +FGGD+VVTA LTGPGI
Sbjct: 162 GGSVVQKNLEVGEVLTIDVSCIAALTPSINFQIKYNAAPVRRAVFGGDNVVTATLTGPGI 221

Query: 177 VFIQSLPFHRLSQRIARAVTSPNMRENPKF----YIQIAVFFLM 216
           VFIQSLPFHRLSQRIAR+VTSPNMRENP+     +I +A  F++
Sbjct: 222 VFIQSLPFHRLSQRIARSVTSPNMRENPRLLRCTHISVAGMFIV 265


>AT4G17420.2 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr4:9722378-9724443 REVERSE LENGTH=267
          Length = 267

 Score =  267 bits (682), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 157/197 (79%), Gaps = 14/197 (7%)

Query: 1   MCFMSGSIEMENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPID 60
           MC+MSGSIEM+N Y PE EVG  QW+ GK+++SIVL N+G +DGFVGIAAP  ARILP+D
Sbjct: 52  MCYMSGSIEMDNTYTPEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLD 111

Query: 61  LAMFNGGILCQPDAFLCSVNDVKVSNTFDQ--RGQNV-VAGAERFLRQKLSGQGVAFILA 117
           LAMF G ILCQPDAFLCSV+DVKV NT  Q  R +N+  AGAE          G+AFI+A
Sbjct: 112 LAMFGGDILCQPDAFLCSVHDVKVVNTVYQRHRARNIAAAGAE----------GLAFIIA 161

Query: 118 GGSVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIK-NNGPARRTMFGGDHVVTALLTGPGI 176
           GGSVVQKNLE+GEVL +DVSCI A+T ++N QIK N  P RR +FGGD+VVTA LTGPGI
Sbjct: 162 GGSVVQKNLEVGEVLTIDVSCIAALTPSINFQIKYNAAPVRRAVFGGDNVVTATLTGPGI 221

Query: 177 VFIQSLPFHRLSQRIAR 193
           VFIQSLPFHRLSQRIAR
Sbjct: 222 VFIQSLPFHRLSQRIAR 238