Miyakogusa Predicted Gene

Lj4g3v0451300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451300.1 tr|A9TCJ5|A9TCJ5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_90989
,55,0.000000000000003,seg,NULL; no description,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; MSS1/TRME-,CUFF.47271.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22870.1 | Symbols: EMB2001 | P-loop containing nucleoside tr...   154   2e-38
AT5G11480.1 | Symbols:  | P-loop containing nucleoside triphosph...   102   1e-22
AT5G58370.2 | Symbols:  | P-loop containing nucleoside triphosph...    50   8e-07
AT5G58370.1 | Symbols:  | P-loop containing nucleoside triphosph...    50   1e-06

>AT2G22870.1 | Symbols: EMB2001 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr2:9739476-9740921 FORWARD LENGTH=300
          Length = 300

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 84/94 (89%)

Query: 73  LFIPPGIEPDEVTDSMILPASNIVVGPYAGDSRIKDVEFVKSSPRARDCPKDDRPEFAVL 132
           LFIPPG+E +E+TD M+LP SNIV+GP+AG S+IK+VEFVKSS RARDCPKDDRPE A+L
Sbjct: 67  LFIPPGVEIEELTDDMVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAIL 126

Query: 133 GRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           GRSNVGKSSLIN LVRKKE+ALTSK+PG  + +N
Sbjct: 127 GRSNVGKSSLINCLVRKKEVALTSKKPGKTQLIN 160


>AT5G11480.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:3669350-3671471
           REVERSE LENGTH=318
          Length = 318

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 67/98 (68%), Gaps = 4/98 (4%)

Query: 73  LFIPPGI----EPDEVTDSMILPASNIVVGPYAGDSRIKDVEFVKSSPRARDCPKDDRPE 128
           LFIPP      E      + IL  SNIV+  YA D+++   ++VKSS +  DCP D  PE
Sbjct: 78  LFIPPETDISGEDSASLTTRILKGSNIVLSKYARDAQVVQADYVKSSVKTEDCPADGLPE 137

Query: 129 FAVLGRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           FA++GRSNVGKSSL+NSLVR+K LALTSK+PG  + +N
Sbjct: 138 FALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCIN 175


>AT5G58370.2 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:23593358-23595645
           FORWARD LENGTH=465
          Length = 465

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 109 VEFVKSSPRARDCPKDDRPEFAVLGRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           +EF  ++  +   P  D PE A  GRSNVGKSSL+N+L R+  +  TS +PG  +T+N
Sbjct: 271 LEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 328


>AT5G58370.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:23593358-23595565
           FORWARD LENGTH=446
          Length = 446

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 109 VEFVKSSPRARDCPKDDRPEFAVLGRSNVGKSSLINSLVRKKELALTSKRPGNVETLN 166
           +EF  ++  +   P  D PE A  GRSNVGKSSL+N+L R+  +  TS +PG  +T+N
Sbjct: 271 LEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 328