Miyakogusa Predicted Gene

Lj4g3v0451230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451230.1 tr|D3NX35|D3NX35_AZOS1 50S ribosomal protein L21
OS=Azospirillum sp. (strain B510) GN=rplU PE=3 SV=1,49.04,7e-19,L21:
ribosomal protein L21,Ribosomal protein L21; Ribosomal_L21p,Ribosomal
protein L21; L21p-like,NU,CUFF.47313.1
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050...   169   1e-42
AT1G35680.1 | Symbols:  | Ribosomal protein L21 | chr1:13208777-...    66   2e-11

>AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 |
           chr4:15050170-15051630 REVERSE LENGTH=270
          Length = 270

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 97/137 (70%)

Query: 126 IGYKVEGPLLEKDGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKV 185
           IGYKV GPL   + +FKPYEPVFA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL L KV
Sbjct: 119 IGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKV 178

Query: 186 MLLGSATQTIIGRPTVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXXXXQELTKLRI 245
           +LLGSA+QTIIGRP +PD           LD KV+IF               QELTKLRI
Sbjct: 179 LLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRI 238

Query: 246 TDIQGIEKPPIVLDEKP 262
           TDIQGIEKP   +  KP
Sbjct: 239 TDIQGIEKPEPKIVHKP 255


>AT1G35680.1 | Symbols:  | Ribosomal protein L21 |
           chr1:13208777-13210246 FORWARD LENGTH=220
          Length = 220

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 61/111 (54%)

Query: 145 EPVFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVMLLGSATQTIIGRPTVPDX 204
           E +FAV+ +G  Q+ V  G  ++T+RLK   V+D+++LNKV+L+G+ T T IG+P V + 
Sbjct: 98  EEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNA 157

Query: 205 XXXXXXXXXXLDAKVIIFXXXXXXXXXXXXXXXQELTKLRITDIQGIEKPP 255
                     L+ KV++F               Q  T++RIT I G E+ P
Sbjct: 158 TVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYP 208