Miyakogusa Predicted Gene

Lj4g3v0451190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451190.1 Non Chatacterized Hit- tr|A9NTQ6|A9NTQ6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,46.46,1e-18,LSD1: zinc finger domain, LSD1 subclass,Zinc finger,
LSD1-type; seg,NULL; FAMILY NOT NAMED,NULL; zf-,CUFF.47264.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21610.1 | Symbols: LOL2 | lsd one like 2 | chr4:11489069-114...   139   4e-34
AT1G32540.1 | Symbols: LOL1 | lsd one like 1 | chr1:11768253-117...   100   6e-22
AT1G32540.3 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...    99   1e-21
AT1G32540.2 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...    99   1e-21
AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    89   8e-19
AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    89   8e-19
AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    89   8e-19
AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    89   8e-19
AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    89   8e-19
AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    89   8e-19
AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    89   8e-19
AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein | ...    82   2e-16

>AT4G21610.1 | Symbols: LOL2 | lsd one like 2 |
           chr4:11489069-11490300 FORWARD LENGTH=155
          Length = 155

 Score =  139 bits (351), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 91/133 (68%), Gaps = 11/133 (8%)

Query: 4   HEAEKQEDGDGPPPGWQXXXXXXXXXXXXXWQTILTPPPSRPSGL-----AQMVCGSCRR 58
           H  E++E+ +GPPPGW+               TI       P+ +     AQMVCGSCRR
Sbjct: 15  HREEEEEEEEGPPPGWESAVLPPPIV------TITAAVNPNPTTVEIPEKAQMVCGSCRR 68

Query: 59  LLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLMYPYGASQVRCSACRFVTEI 118
           LLSY RG+KHVKCS CQTVN+VLEA+QVGQV C +C +LLMYPYGA  VRCS+C  VT+I
Sbjct: 69  LLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDI 128

Query: 119 GEHNKRPPWSVQQ 131
            E+NKRPPWS QQ
Sbjct: 129 SENNKRPPWSEQQ 141


>AT1G32540.1 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768253-11769591 FORWARD LENGTH=187
          Length = 187

 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 39  TPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLL 98
            PPP     +AQ+VCG C  LL Y RGA  V+CSCC TVN+ LEA+QV  V C +C +LL
Sbjct: 97  VPPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 154

Query: 99  MYPYGASQVRCSACRFVTEIG 119
           MY YGA  V+C+ C FVT +G
Sbjct: 155 MYQYGARSVKCAVCNFVTSVG 175


>AT1G32540.3 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 40  PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
           PPP     +AQ+VCG C  LL Y RGA  V+CSCC TVN+ LEA+QV  V C +C +LLM
Sbjct: 65  PPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLM 122

Query: 100 YPYGASQVRCSACRFVTEIG 119
           Y YGA  V+C+ C FVT +G
Sbjct: 123 YQYGARSVKCAVCNFVTSVG 142


>AT1G32540.2 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 40  PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
           PPP     +AQ+VCG C  LL Y RGA  V+CSCC TVN+ LEA+QV  V C +C +LLM
Sbjct: 65  PPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLM 122

Query: 100 YPYGASQVRCSACRFVTEIG 119
           Y YGA  V+C+ C FVT +G
Sbjct: 123 YQYGARSVKCAVCNFVTSVG 142


>AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---------LEADQVGQVKCASCAVLL 98
           +A ++CG CR +L Y RGA  V+CSCCQT N+V           + QV Q+ C  C   L
Sbjct: 48  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTL 107

Query: 99  MYPYGASQVRCSACRFVTEIGEHNKRPPW 127
           MYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 108 MYPYGASSVKCAVCQFVTNVNMSNGRVPL 136


>AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---------LEADQVGQVKCASCAVLL 98
           +A ++CG CR +L Y RGA  V+CSCCQT N+V           + QV Q+ C  C   L
Sbjct: 48  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTL 107

Query: 99  MYPYGASQVRCSACRFVTEIGEHNKRPPW 127
           MYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 108 MYPYGASSVKCAVCQFVTNVNMSNGRVPL 136


>AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---------LEADQVGQVKCASCAVLL 98
           +A ++CG CR +L Y RGA  V+CSCCQT N+V           + QV Q+ C  C   L
Sbjct: 43  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTL 102

Query: 99  MYPYGASQVRCSACRFVTEIGEHNKRPPW 127
           MYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 103 MYPYGASSVKCAVCQFVTNVNMSNGRVPL 131


>AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---------LEADQVGQVKCASCAVLL 98
           +A ++CG CR +L Y RGA  V+CSCCQT N+V           + QV Q+ C  C   L
Sbjct: 43  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTL 102

Query: 99  MYPYGASQVRCSACRFVTEIGEHNKRPPW 127
           MYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 103 MYPYGASSVKCAVCQFVTNVNMSNGRVPL 131


>AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---------LEADQVGQVKCASCAVLL 98
           +A ++CG CR +L Y RGA  V+CSCCQT N+V           + QV Q+ C  C   L
Sbjct: 43  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTL 102

Query: 99  MYPYGASQVRCSACRFVTEIGEHNKRPPW 127
           MYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 103 MYPYGASSVKCAVCQFVTNVNMSNGRVPL 131


>AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---------LEADQVGQVKCASCAVLL 98
           +A ++CG CR +L Y RGA  V+CSCCQT N+V           + QV Q+ C  C   L
Sbjct: 43  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTL 102

Query: 99  MYPYGASQVRCSACRFVTEIGEHNKRPPW 127
           MYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 103 MYPYGASSVKCAVCQFVTNVNMSNGRVPL 131


>AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---------LEADQVGQVKCASCAVLL 98
           +A ++CG CR +L Y RGA  V+CSCCQT N+V           + QV Q+ C  C   L
Sbjct: 43  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTL 102

Query: 99  MYPYGASQVRCSACRFVTEIGEHNKRPPW 127
           MYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 103 MYPYGASSVKCAVCQFVTNVNMSNGRVPL 131


>AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=210
          Length = 210

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 54/115 (46%), Gaps = 35/115 (30%)

Query: 48  LAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLE------------------------- 82
           +A ++CG CR +L Y RGA  V+CSCCQT N+V E                         
Sbjct: 43  MAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGL 102

Query: 83  ----------ADQVGQVKCASCAVLLMYPYGASQVRCSACRFVTEIGEHNKRPPW 127
                     + QV Q+ C  C   LMYPYGAS V+C+ C+FVT +   N R P 
Sbjct: 103 AHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPL 157



 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 50  QMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV---LEADQVGQVKCASCAVLLMYPYGASQ 106
           Q+VC  CR LL YPRGA +V+C+ C T+N+V        +  + C  C  +LMY  GAS 
Sbjct: 4   QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASS 63

Query: 107 VRCSACRFVTEIGE 120
           VRCS C+    + E
Sbjct: 64  VRCSCCQTTNLVPE 77