Miyakogusa Predicted Gene

Lj4g3v0451150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451150.1 tr|F2DQ57|F2DQ57_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,50,4e-19,ZF_RING_1,Zinc
finger, RING-type, conserved site; zf-C3HC4_2,NULL; ZF_RING_2,Zinc
finger, RING-type;,CUFF.47260.1
         (221 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | c...   123   8e-29
AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c...   109   2e-24
AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c...   109   2e-24
AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | c...   102   1e-22
AT3G58030.4 | Symbols:  | RING/U-box superfamily protein | chr3:...    97   1e-20
AT3G58030.3 | Symbols:  | RING/U-box superfamily protein | chr3:...    97   1e-20
AT3G58030.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    97   1e-20
AT3G58030.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    97   1e-20
AT1G74990.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    95   4e-20
AT1G19310.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    94   9e-20
AT2G23780.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    93   1e-19
AT2G42030.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    93   1e-19
AT2G44410.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    78   5e-15
AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:112177...    55   3e-08
AT3G26730.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    47   9e-06

>AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 |
           chr4:13735576-13736307 FORWARD LENGTH=243
          Length = 243

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 110/200 (55%), Gaps = 25/200 (12%)

Query: 23  GGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDE-PPQCPVCKDGISHTT 81
           G FDCNICL+ AH+PVVTLCGHL+CWPCIYKWL+VQ +S++ D+    CPVCK  I+ T+
Sbjct: 40  GCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITS 99

Query: 82  MVPLYGRGPS--DSNLKVQHKDVL---IPPRPTCSGAKS-LFAASSQSSGQQLPYRNP-Y 134
           +VPLYGRG S   S    + +D L   IP RP  S  ++ + +ASS +   Q    +P +
Sbjct: 100 LVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSPSF 159

Query: 135 QNQDFNQEEEHDDETSQQMVTNLGGATMATGFPHLVFGMFG-------VGXXXXXXXXXX 187
            N  ++       E+     T+L  A M + F + V GMFG        G          
Sbjct: 160 HNHQYSPRGFTTTES-----TDLANAVMMS-FLYPVIGMFGDLVYTRIFGTFTNTIAQPY 213

Query: 188 XXXRFRRLEMQADKSLNRIS 207
              R     MQ +KSLNR+S
Sbjct: 214 QSQRM----MQREKSLNRVS 229


>AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
           chr4:1557905-1558654 REVERSE LENGTH=249
          Length = 249

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 95/195 (48%), Gaps = 13/195 (6%)

Query: 22  DGGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPD--EPPQCPVCKDGISH 79
           D  FDCNICL+   EPVVTLCGHL+CWPCI+KWL VQS S + +     QCPVCK  +SH
Sbjct: 43  DSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSH 102

Query: 80  TTMVPLYGRGPSDSNLKVQHKDVLIPPRPT-----CSGAKSLFAASSQSSGQQLPYRNPY 134
           +T+VPLYGRG   +  + ++    +P RP           S +A++     Q++ + +P 
Sbjct: 103 STLVPLYGRGRCTTQEEGKNS---VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQ 159

Query: 135 QNQDFNQEEEHDDETSQQMVTNLGGATMATGFPHLVFG---MFGVGXXXXXXXXXXXXXR 191
           +           +  S   V +     +       +FG   M                 R
Sbjct: 160 EGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPR 219

Query: 192 FRRLEMQADKSLNRI 206
            RR  MQADKSL RI
Sbjct: 220 MRRRIMQADKSLGRI 234


>AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
           chr4:1557905-1558654 REVERSE LENGTH=249
          Length = 249

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 95/195 (48%), Gaps = 13/195 (6%)

Query: 22  DGGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPD--EPPQCPVCKDGISH 79
           D  FDCNICL+   EPVVTLCGHL+CWPCI+KWL VQS S + +     QCPVCK  +SH
Sbjct: 43  DSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSH 102

Query: 80  TTMVPLYGRGPSDSNLKVQHKDVLIPPRPT-----CSGAKSLFAASSQSSGQQLPYRNPY 134
           +T+VPLYGRG   +  + ++    +P RP           S +A++     Q++ + +P 
Sbjct: 103 STLVPLYGRGRCTTQEEGKNS---VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQ 159

Query: 135 QNQDFNQEEEHDDETSQQMVTNLGGATMATGFPHLVFG---MFGVGXXXXXXXXXXXXXR 191
           +           +  S   V +     +       +FG   M                 R
Sbjct: 160 EGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPR 219

Query: 192 FRRLEMQADKSLNRI 206
            RR  MQADKSL RI
Sbjct: 220 MRRRIMQADKSLGRI 234


>AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 |
           chr4:14007614-14008195 REVERSE LENGTH=193
          Length = 193

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 62/107 (57%), Gaps = 12/107 (11%)

Query: 10  EWEGSETETVSCDGGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLA------ 63
           E +  +T  V   G FDCNICL+   +PVVTLCGHL+CWPCI+KW Y  + S        
Sbjct: 4   EKDEDDTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYD 63

Query: 64  -PDEPPQCPVCKDGISHTTMVPLYGRGPSDSNLKVQHKDVLIPPRPT 109
              EPP+CPVCK  +S  T+VP+YGRG      K       +P RPT
Sbjct: 64  HKREPPKCPVCKSDVSEATLVPIYGRGQ-----KAPQSGSNVPSRPT 105


>AT3G58030.4 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 14/115 (12%)

Query: 22  DGGF-DCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHT 80
           DG F DCNICL+ + EPV+T CGHLYCWPC+Y+WL +  A        +CPVCK  ++  
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAK-------ECPVCKGEVTSK 185

Query: 81  TMVPLYGRGPSDSNLKVQHKDVLIPPRPTCSGAKSLFAASSQSSGQQLPYRNPYQ 135
           T+ P+YGRG     ++ +  D  +P RP     +SL     +++ Q+ P+  P +
Sbjct: 186 TVTPIYGRGNHKREIE-ESLDTKVPMRPHARRIESL-----RNTIQRSPFTIPME 234


>AT3G58030.3 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 14/115 (12%)

Query: 22  DGGF-DCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHT 80
           DG F DCNICL+ + EPV+T CGHLYCWPC+Y+WL +  A        +CPVCK  ++  
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAK-------ECPVCKGEVTSK 185

Query: 81  TMVPLYGRGPSDSNLKVQHKDVLIPPRPTCSGAKSLFAASSQSSGQQLPYRNPYQ 135
           T+ P+YGRG     ++ +  D  +P RP     +SL     +++ Q+ P+  P +
Sbjct: 186 TVTPIYGRGNHKREIE-ESLDTKVPMRPHARRIESL-----RNTIQRSPFTIPME 234


>AT3G58030.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 14/115 (12%)

Query: 22  DGGF-DCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHT 80
           DG F DCNICL+ + EPV+T CGHLYCWPC+Y+WL +  A        +CPVCK  ++  
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAK-------ECPVCKGEVTSK 185

Query: 81  TMVPLYGRGPSDSNLKVQHKDVLIPPRPTCSGAKSLFAASSQSSGQQLPYRNPYQ 135
           T+ P+YGRG     ++ +  D  +P RP     +SL     +++ Q+ P+  P +
Sbjct: 186 TVTPIYGRGNHKREIE-ESLDTKVPMRPHARRIESL-----RNTIQRSPFTIPME 234


>AT3G58030.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 14/115 (12%)

Query: 22  DGGF-DCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHT 80
           DG F DCNICL+ + EPV+T CGHLYCWPC+Y+WL +  A        +CPVCK  ++  
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAK-------ECPVCKGEVTSK 185

Query: 81  TMVPLYGRGPSDSNLKVQHKDVLIPPRPTCSGAKSLFAASSQSSGQQLPYRNPYQ 135
           T+ P+YGRG     ++ +  D  +P RP     +SL     +++ Q+ P+  P +
Sbjct: 186 TVTPIYGRGNHKREIE-ESLDTKVPMRPHARRIESL-----RNTIQRSPFTIPME 234


>AT1G74990.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:28159837-28160250 REVERSE LENGTH=137
          Length = 137

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 54/88 (61%), Gaps = 7/88 (7%)

Query: 25  FDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHTTMVP 84
           F CNICLE A EP+VTLCGHL+CWPC+YKWL+  S S        CPVCK  +   T+VP
Sbjct: 17  FGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKS------NHCPVCKALVKEDTLVP 70

Query: 85  LYGRG-PSDSNLKVQHKDVLIPPRPTCS 111
           LYG G PS       +  V +P RP  +
Sbjct: 71  LYGMGKPSSDPRSKLNSGVTVPNRPAAT 98


>AT1G19310.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:6676424-6677104 REVERSE LENGTH=226
          Length = 226

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 58/86 (67%), Gaps = 7/86 (8%)

Query: 25  FDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHTTMVP 84
           F+CNICL+ A +P+VTLCGHL+CWPC+YKWL++ S S        CPVCK  I    +VP
Sbjct: 21  FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSK------DCPVCKAVIEEDRLVP 74

Query: 85  LYGRGPSDSNLKVQHKDVL-IPPRPT 109
           LYGRG S ++ + +    L +P RP+
Sbjct: 75  LYGRGKSSADPRSKSIPGLEVPNRPS 100


>AT2G23780.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:10123551-10124234 REVERSE LENGTH=227
          Length = 227

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 7/96 (7%)

Query: 15  ETETVSCDGGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCK 74
             +T    G F+CNIC E A +P+VTLCGHL+CWPC+Y+WL+  S S       +CPVCK
Sbjct: 16  NNDTNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHS------QECPVCK 69

Query: 75  DGISHTTMVPLYGRGPSDSNLKVQ-HKDVLIPPRPT 109
             +    +VPLYGRG + ++ + + +  + IP RPT
Sbjct: 70  AVVQDDKLVPLYGRGKNQTDPRSKRYPGLRIPNRPT 105


>AT2G42030.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:17539069-17540346 REVERSE LENGTH=425
          Length = 425

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 10/114 (8%)

Query: 4   EHYLTQEWEGSETETVSCDGGF-DCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASL 62
           E  +T+E    E ++V  DG F DC ICL+ + +PVVT CGHLYCW C+Y+WL V     
Sbjct: 118 EDNVTEEKRDVE-KSVGSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVS---- 172

Query: 63  APDEPPQCPVCKDGISHTTMVPLYGRGPSDSNLKVQHKDVLIPPRPTCSGAKSL 116
              E  +CPVCK  +S  T+ P+YGRG      + +  +  IP RP     +SL
Sbjct: 173 ---EAKECPVCKGEVSVKTVTPIYGRGIQKRESE-EVSNTKIPSRPQARRTESL 222


>AT2G44410.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:18328873-18330114 FORWARD LENGTH=413
          Length = 413

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 13/105 (12%)

Query: 17  ETVSCDGGF-DCNICLEFAHEPVVTLCGHLYCWPCIYK--WLYVQSASLAPDEPPQCPVC 73
           +T S  GGF DCNICLE A +P++T CGHL+CW C Y+   +Y+           +CPVC
Sbjct: 114 KTSSVPGGFFDCNICLEKAEDPILTCCGHLFCWGCFYQLPLIYLNIK--------ECPVC 165

Query: 74  KDGISHTTMVPLYGRGPSDSNLKVQHKD--VLIPPRPTCSGAKSL 116
              ++   ++P+YG G      K + +D  + +PPRP     +S+
Sbjct: 166 DGEVTDAEVIPIYGNGDDCDGTKPKLEDCGISLPPRPNAKRVESV 210


>AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 |
           chr2:11217767-11220415 REVERSE LENGTH=381
          Length = 381

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 14  SETETVSCDGGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVC 73
           S +++ S +    C +CL     P  T CGH++CW CI +W          +E  +CP+C
Sbjct: 314 STSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWC---------NEKQECPLC 364

Query: 74  KDGISHTTMVPLY 86
           +   +H+++V LY
Sbjct: 365 RTPNTHSSLVCLY 377


>AT3G26730.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:9823770-9827270 FORWARD LENGTH=772
          Length = 772

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 27  CNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHTTMVPLY 86
           C ICLE+   P +T CGH++C+PCI ++L     +   D   +CP+C   IS   +  +Y
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPCILQYLLTGVDNHKVDCFKRCPLCFVMISPRELYTVY 304