Miyakogusa Predicted Gene

Lj4g3v0451060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0451060.1 Non Chatacterized Hit- tr|B8A6M6|B8A6M6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,47.25,3e-18,HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; HLH,Helix-loop-helix domain; no
de,CUFF.47251.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   171   6e-43
AT2G31220.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   171   9e-43
AT1G06170.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   160   1e-39
AT1G06170.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   160   1e-39
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel...    54   2e-07
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel...    54   2e-07
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel...    54   2e-07
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL...    54   2e-07
AT5G10570.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   3e-07
AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623...    52   6e-07
AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623...    52   8e-07

>AT2G31210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:13296655-13298139 FORWARD
           LENGTH=428
          Length = 428

 Score =  171 bits (434), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 158/339 (46%), Gaps = 59/339 (17%)

Query: 79  LHLPTCSASSLLTTPPNFHNSMGFLGDLPIGSDNTSAASSVLCDPLFHLNQVPPPPTAFR 138
           LHLP CS S                  LP  S +  A S    DPLFHLN  P PP    
Sbjct: 121 LHLPRCSMS------------------LP--SSDIMAGSCFTYDPLFHLNLPPQPPLIPS 160

Query: 139 ELFQSLPRGYSFPMSSQNXXXXXXXXXXXXXXXXXQLDMGVLEFNTINRVTASVXXXXXX 198
             +     GY   + + N                 Q D G++EF+   R           
Sbjct: 161 NDYS----GYLLGIDT-NTTTQRDESNVGDENNNAQFDSGIIEFSKEIRRKGRGKRKNKP 215

Query: 199 XXXXXXXXXQLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELKILVXXXX- 257
                     LN +Y+ L+ LIPSP+K DRAS++ D IDYI EL R ++ELK LV     
Sbjct: 216 FTTERERRCHLNERYEALKLLIPSPSKGDRASILQDGIDYINELRRRVSELKYLVERKRC 275

Query: 258 --------------------------XXXXXXXXXXTEDDGAESCNIKPFGDPDGHIRTS 291
                                                E D  + C+       +  +R S
Sbjct: 276 GGRHKNNEVDDNNNNKNLDDHGNEDDDDDDENMEKKPESDVIDQCS------SNNSLRCS 329

Query: 292 WLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVLDELQLEIHHVAGGHVGEYCS 351
           WLQRKSK +E            K+ Q+KKINCLL  SKVLD+LQL++HHVAGG +GE+ S
Sbjct: 330 WLQRKSKVTEVDVRIVDDEVTIKVVQKKKINCLLLVSKVLDQLQLDLHHVAGGQIGEHYS 389

Query: 352 FLLNSKTIEGSSVYASAIANRMIDVLDTQYYAAAVPHSS 390
           FL N+K  EGS++YASAIANR+I+V+D ++Y A++P+S+
Sbjct: 390 FLFNTKIYEGSTIYASAIANRVIEVVD-KHYMASLPNSN 427


>AT2G31220.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:13303014-13304661 FORWARD
           LENGTH=458
          Length = 458

 Score =  171 bits (433), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 175/378 (46%), Gaps = 51/378 (13%)

Query: 27  QQSMWDPNVQEFQNMNYANHLEHQPHEQQFHQIEAQSYNPSSIMDPPYPAIDLHLPTCSA 86
           Q S WD   Q+F N+                        P+S   P   ++ LHLP CS 
Sbjct: 108 QHSNWDNGYQDFVNLG-----------------------PNSATTPDLLSL-LHLPRCSL 143

Query: 87  SSLLTTPPNFHNSMGFLGDLPIGSDNTSAASSVLCDPLFHLNQVPPPPTAFRELFQ-SLP 145
                 PPN H S   L        ++S+A++V+ DPLFHLN  P  P    +L   S  
Sbjct: 144 ------PPNHHPS-SMLPTSFSDIMSSSSAAAVMYDPLFHLN-FPMQPRDQNQLRNGSCL 195

Query: 146 RGYSFPMSSQNXXXXXXXXXXXXXXXXXQLDMGVLEFNTINRVTASVXXXXXXXXXXXXX 205
            G    +                       +  +LEFN                      
Sbjct: 196 LGVEDQIQMDANGGMNVLYFEGANNNNGGFENEILEFNNGVTRKGRGSRKSRTSPTERER 255

Query: 206 XXQLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELKILVXXXXXXXXXXXX 265
               N ++  L++LIP+PTKIDRAS+VG+AIDYI+EL+RT+ E K+LV            
Sbjct: 256 RVHFNDRFFDLKNLIPNPTKIDRASIVGEAIDYIKELLRTIEEFKMLVEKKRCGRFRSKK 315

Query: 266 XX---------TEDDGAESCNIKPFGDPD---------GHIRTSWLQRKSKDSEXXXXXX 307
                       +++  ++ N KP  + D           +R SWL+RKSK +E      
Sbjct: 316 RARVGEGGGGEDQEEEEDTVNYKPQSEVDQSCFNKNNNNSLRCSWLKRKSKVTEVDVRII 375

Query: 308 XXXXXXKLSQRKKINCLLFASKVLDELQLEIHHVAGGHVGEYCSFLLNSKTIEGSSVYAS 367
                 KL Q+KKINCLLF +KVLD+LQL++HHVAGG +GE+ SFL N+K  EGS VYAS
Sbjct: 376 DDEVTIKLVQKKKINCLLFTTKVLDQLQLDLHHVAGGQIGEHYSFLFNTKICEGSCVYAS 435

Query: 368 AIANRMIDVLDTQYYAAA 385
            IA+ +++V++ QY  A 
Sbjct: 436 GIADTLMEVVEKQYMEAV 453


>AT1G06170.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1885146-1886564 REVERSE
           LENGTH=420
          Length = 420

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 139/279 (49%), Gaps = 29/279 (10%)

Query: 113 TSAASSVLCDPLFHLNQVPPPPTAFRELFQSLPRGYSFPMSSQNXXXXXXXXXXXXXXXX 172
           T+++S    DPLFHLN    PP              SF    Q+                
Sbjct: 151 TTSSSVAAYDPLFHLNFPLQPPNG------------SFMGVDQDQTETNQGVNLMYDEEN 198

Query: 173 XQLDMGVLEFNTINRVTASVXXXXXXXXXXXXXXXQLNGKYKILRSLIPSPTKIDRASVV 232
             LD G      +NR                        ++  L++LIP+PTK DRAS+V
Sbjct: 199 NNLDDG------LNR-KGRGSKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKNDRASIV 251

Query: 233 GDAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDDG-------AESCNIKPFGDPD 285
           G+AIDYI+EL+RT++E K+LV                D+         E C I      +
Sbjct: 252 GEAIDYIKELLRTIDEFKLLVEKKRVKQRNREGDDVVDENFKAQSEVVEQCLINK---KN 308

Query: 286 GHIRTSWLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVLDELQLEIHHVAGGH 345
             +R SWL+RKSK ++            K+ Q+KKINCLLF SKV+D+L+L++HHVAG  
Sbjct: 309 NALRCSWLKRKSKFTDVDVRIIDDEVTIKIVQKKKINCLLFVSKVVDQLELDLHHVAGAQ 368

Query: 346 VGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAA 384
           +GE+ SFL N+K  EGSSVYASAIA+R+++VL  QY  A
Sbjct: 369 IGEHHSFLFNAKISEGSSVYASAIADRVMEVLKKQYMEA 407


>AT1G06170.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1885146-1886564 REVERSE
           LENGTH=420
          Length = 420

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 139/279 (49%), Gaps = 29/279 (10%)

Query: 113 TSAASSVLCDPLFHLNQVPPPPTAFRELFQSLPRGYSFPMSSQNXXXXXXXXXXXXXXXX 172
           T+++S    DPLFHLN    PP              SF    Q+                
Sbjct: 151 TTSSSVAAYDPLFHLNFPLQPPNG------------SFMGVDQDQTETNQGVNLMYDEEN 198

Query: 173 XQLDMGVLEFNTINRVTASVXXXXXXXXXXXXXXXQLNGKYKILRSLIPSPTKIDRASVV 232
             LD G      +NR                        ++  L++LIP+PTK DRAS+V
Sbjct: 199 NNLDDG------LNR-KGRGSKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKNDRASIV 251

Query: 233 GDAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDDG-------AESCNIKPFGDPD 285
           G+AIDYI+EL+RT++E K+LV                D+         E C I      +
Sbjct: 252 GEAIDYIKELLRTIDEFKLLVEKKRVKQRNREGDDVVDENFKAQSEVVEQCLINK---KN 308

Query: 286 GHIRTSWLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVLDELQLEIHHVAGGH 345
             +R SWL+RKSK ++            K+ Q+KKINCLLF SKV+D+L+L++HHVAG  
Sbjct: 309 NALRCSWLKRKSKFTDVDVRIIDDEVTIKIVQKKKINCLLFVSKVVDQLELDLHHVAGAQ 368

Query: 346 VGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAA 384
           +GE+ SFL N+K  EGSSVYASAIA+R+++VL  QY  A
Sbjct: 369 IGEHHSFLFNAKISEGSSVYASAIADRVMEVLKKQYMEA 407


>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr3:9832953-9834790 REVERSE LENGTH=494
          Length = 494

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 36/42 (85%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDAIDY++EL++ +N+L
Sbjct: 318 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 359


>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr3:9832953-9834790 REVERSE LENGTH=494
          Length = 494

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 36/42 (85%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDAIDY++EL++ +N+L
Sbjct: 318 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 359


>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr3:9832953-9834790 REVERSE LENGTH=494
          Length = 494

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 36/42 (85%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDAIDY++EL++ +N+L
Sbjct: 318 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 359


>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:4384758-4386392
           FORWARD LENGTH=450
          Length = 450

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 36/42 (85%)

Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
           +LN +  +LRS++P  +K+DRAS++GDAIDY++EL++ +N+L
Sbjct: 278 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 319


>AT5G10570.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:3341357-3342877 FORWARD
           LENGTH=315
          Length = 315

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 34/42 (80%)

Query: 209 LNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELK 250
           LN +  +LRS++P  TK+DR S++GDAIDY++EL+  +N+L+
Sbjct: 163 LNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQ 204


>AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 |
           chr5:26237137-26238904 FORWARD LENGTH=351
          Length = 351

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 34/42 (80%)

Query: 209 LNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELK 250
           LN +  +LRS++P  +K+DR S++GDAIDY++EL+  +N+L+
Sbjct: 190 LNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQ 231


>AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 |
           chr5:26237137-26238635 FORWARD LENGTH=290
          Length = 290

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 34/42 (80%)

Query: 209 LNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELK 250
           LN +  +LRS++P  +K+DR S++GDAIDY++EL+  +N+L+
Sbjct: 190 LNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQ 231