Miyakogusa Predicted Gene

Lj4g3v0450850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450850.1 Non Chatacterized Hit- tr|J3M2Q0|J3M2Q0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G3,67.86,6e-19,seg,NULL; Clathrin_lg_ch,Clathrin light chain;
coiled-coil,NULL; PROTEIN BINDING / PROTEIN TRANSPORT,CUFF.47233.1
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20760.1 | Symbols:  | Clathrin light chain protein | chr2:89...   116   7e-27
AT2G40060.1 | Symbols:  | Clathrin light chain protein | chr2:16...   111   3e-25
AT3G51890.1 | Symbols:  | Clathrin light chain protein | chr3:19...   102   2e-22

>AT2G20760.1 | Symbols:  | Clathrin light chain protein |
           chr2:8943279-8945108 REVERSE LENGTH=338
          Length = 338

 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 80/139 (57%), Gaps = 3/139 (2%)

Query: 41  PESPDIFGFSDPNPNYS-QSPFEPE-HVVENGDENGYDDGVFVSDGPVLPPPGDMEPEEG 98
           P SP+ +GF   +PN+   SPFE   +           D +F SDGP+LP P +M  EEG
Sbjct: 50  PASPNGYGFGASSPNHDFSSPFESSVNDANGNGGGSGGDAIFASDGPILPDPNEMR-EEG 108

Query: 99  YALREWRRQNAIQXXXXXXXXXXXXXXXXXXAEDYKVAFYEKRKLNVESNKVQNREREKL 158
           +  REWRR N I                   AED+K AFYEKR   +E+NK  NRE+EKL
Sbjct: 109 FQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKEKL 168

Query: 159 YLANQEKFHKEADKNYWKA 177
           Y ANQEKFHKE DK+YWKA
Sbjct: 169 YWANQEKFHKEVDKHYWKA 187


>AT2G40060.1 | Symbols:  | Clathrin light chain protein |
           chr2:16726564-16728001 FORWARD LENGTH=258
          Length = 258

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 77  DGVFVS----DGPVLPPPGDMEPEEGYALREWRRQNAIQXXXXXXXXXXXXXXXXXXAED 132
           DG+F S    DGP+LPPP +ME +EG+ALREWRRQNAIQ                  A+ 
Sbjct: 63  DGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQ 122

Query: 133 YKVAFYEKRKLNVESNKVQNREREKLYLANQEKFHKEADKNYWKA 177
           YK  F++K ++  E+NK  NRE+EKLYL NQEKF+ E+ KNYWKA
Sbjct: 123 YKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKA 167


>AT3G51890.1 | Symbols:  | Clathrin light chain protein |
           chr3:19249686-19250890 REVERSE LENGTH=258
          Length = 258

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 73  NGYDDGVFVSDGPVLPPPGDMEPEEGYALREWRRQNAIQXXXXXXXXXXXXXXXXXXAED 132
           N +DD    ++  +LPPP  ME EEG+ALREWRR NA++                  AE 
Sbjct: 76  NSFDD----TNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQ 131

Query: 133 YKVAFYEKRKLNVESNKVQNREREKLYLANQEKFHKEADKNYWKA 177
           YK  FY KR + +E+NK  NRE+EK +L NQEKF+ EADKN WKA
Sbjct: 132 YKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKA 176