Miyakogusa Predicted Gene

Lj4g3v0450530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450530.1 Non Chatacterized Hit- tr|I1LWN6|I1LWN6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,80.56,0,Short
conserved domain in transcriptional re,Plus-3 domain, subgroup;
PLUS3,Plus-3; Plus-3,Plus-3; c,CUFF.47237.1
         (636 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61040.1 | Symbols: VIP5 | plus-3 domain-containing protein |...   601   e-172

>AT1G61040.1 | Symbols: VIP5 | plus-3 domain-containing protein |
           chr1:22483817-22485748 FORWARD LENGTH=643
          Length = 643

 Score =  601 bits (1549), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 340/639 (53%), Positives = 409/639 (64%), Gaps = 19/639 (2%)

Query: 1   MADLENLLLEXXXXXXXXXXXXHSLPPXXXXXXXXXXXXXXXXXXXXXXXELNYASRKKG 60
           M DLENLLLE            H   P                       +  YASRK  
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSRH---PPSSRRREGSYSDGSSDSRDDSDEDRGYASRKP- 56

Query: 61  SGSQVPVKKRLDPTKRDDDLGSQEEEGDDDGRSDHEGDSSDESNIGDDLYKDEDDRRKLS 120
           SGSQVP+KKRL+  +  +D  ++ E G  DG SD EGDSS+ES+ GDDLYK+E+DR+KL+
Sbjct: 57  SGSQVPLKKRLEAER--EDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLA 114

Query: 121 EMSELQREMILSDRAAKKDDKSLLGKIALKRDKGKATVPRKQSPPL--XXXXXXXXXXXX 178
            M+E QREMILS+RA KK DK+   K+  KR+  K  V +K++ PL              
Sbjct: 115 GMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSAD 174

Query: 179 XXXXKNEALNELRAKRMKQQDPEAHRRLKEATRS-SGTRHFSPPKRKPFXXXXXXXXXXX 237
               K++ALNELRAKRMKQQDP A R+L++A++  SG+R FS  KRKP            
Sbjct: 175 RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQS 234

Query: 238 XXXXXXXXXXXXXXXXXXXXXXXXXRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEE 297
                                         S+  +F+D+KE+TIRRSKLAKW MEPFFEE
Sbjct: 235 DSDSRSQSDDEGSNGGMLDSDDDR------SDVPTFEDVKEVTIRRSKLAKWLMEPFFEE 288

Query: 298 LIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQYKLENKITYKYLNVVWGNESSAAR 357
           LIVGCFVRVGIGRSKSGPIYRLC VKNVDA+DPD+ YKLENK T+KYLNVVWGNE+SAAR
Sbjct: 289 LIVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAAR 348

Query: 358 WQMAMISDSAPLEEEFKQWVKEVERSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQML 417
           WQMAMISD  PLEEE++QW++EVER+ GRMP+KQD+ EKK+AIQ+  +FVYSA TVKQML
Sbjct: 349 WQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQML 408

Query: 418 QEKKSASSRPLNVAAEKDRLRREMEIAISKNDESEVERIKARLIELEASRQEKVKDAKAL 477
           QEKKSAS RP+NVAAEKDRLR+E+EIA SKNDE+ VERIK+++ +L+ASR +K  D KAL
Sbjct: 409 QEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKAL 468

Query: 478 KLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSMNYYVSKPGDKAASGN 537
           KLAEMN+KNR ENFKNASE+K +   LKAGEAGYDPFSRRWTRS NYY  K  +K   G 
Sbjct: 469 KLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGK--NKGKDGE 526

Query: 538 NSTNGIVADAGSNGTGVPAEXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTESYSLHNFEL 597
            +   + A   +NG    A                 GKL+DT AP+ QG E   LHNFEL
Sbjct: 527 ENEAAVAAAVETNGADAGA--GVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFEL 584

Query: 598 PISXXXXXXXXXXXXXXXXXMARKQKIEATVGFKVLEND 636
            +S                 MARKQ  EATVG +V END
Sbjct: 585 SLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAEND 623