Miyakogusa Predicted Gene

Lj4g3v0450090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450090.1 Non Chatacterized Hit- tr|Q1SKW7|Q1SKW7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,49.11,2e-18,seg,NULL,CUFF.47185.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11120.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   148   1e-36
AT1G11120.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   135   1e-32
AT1G58007.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    77   6e-15
AT1G58007.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    77   6e-15
AT4G28170.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    70   5e-13
AT1G09812.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    67   3e-12

>AT1G11120.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 10 plant
           structures; EXPRESSED DURING: 4 anthesis, F mature
           embryo stage, petal differentiation and expansion stage,
           E expanded cotyledon stage, D bilateral stage; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:3715229-3717320 FORWARD
           LENGTH=161
          Length = 161

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 94/137 (68%), Gaps = 7/137 (5%)

Query: 8   NNSNGWPPTGAPLNLQRDEHWSS-FDSSVNAVSFGFVATAILISMFLVMAIFERFLXXXX 66
           N ++ WPP GAP+NL+R+E W S FD SVNAVSFGFVATAILISMFLVMAIFER +    
Sbjct: 10  NLNHQWPPIGAPMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTT 69

Query: 67  XXXXXXXXXXXG---DVESQMGFGG---KLGYPSPKMSVYDSGVSVLMPGDAIPTFIAHP 120
                           ++S++GF G   KLGY SPKM+VY +GVSVLMPGD IPTFIAHP
Sbjct: 70  TSTTNSDSSSSRVLPGMDSRVGFNGAATKLGYQSPKMTVYSNGVSVLMPGDDIPTFIAHP 129

Query: 121 APAPCCPERNSWPSHQQ 137
           AP PC P+  S   HQ 
Sbjct: 130 APVPCPPQNISQSQHQH 146


>AT1G11120.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins
           in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93;
           Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes
           - 35 (source: NCBI BLink). | chr1:3715229-3717320
           FORWARD LENGTH=187
          Length = 187

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 94/163 (57%), Gaps = 33/163 (20%)

Query: 8   NNSNGWPPTGAPLNLQRDEHWSS-FDSSVNAVSFGFVATAILISMFLVMAIFERFLXXXX 66
           N ++ WPP GAP+NL+R+E W S FD SVNAVSFGFVATAILISMFLVMAIFER +    
Sbjct: 10  NLNHQWPPIGAPMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTT 69

Query: 67  XXXXXXXXXXXG---DVESQMGFGG---KLGYPSPK------------------------ 96
                           ++S++GF G   KLGY SPK                        
Sbjct: 70  TSTTNSDSSSSRVLPGMDSRVGFNGAATKLGYQSPKASNNRIVFSFSFNILKSELFIVII 129

Query: 97  --MSVYDSGVSVLMPGDAIPTFIAHPAPAPCCPERNSWPSHQQ 137
             M+VY +GVSVLMPGD IPTFIAHPAP PC P+  S   HQ 
Sbjct: 130 LRMTVYSNGVSVLMPGDDIPTFIAHPAPVPCPPQNISQSQHQH 172


>AT1G58007.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G09812.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr1:21446237-21447059 REVERSE LENGTH=115
          Length = 115

 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 33  SSVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXXXGDVESQMGFGGKLGY 92
           SS+NA+SFGFVATAILI MF++MAI E                             KL  
Sbjct: 21  SSMNAISFGFVATAILILMFIIMAILEHLFRSDHSSSYDVDDSSQFQ---------KLAE 71

Query: 93  PSPKMSVYDSGVSVLMPGDAIPTFIAHPAPAPCCPERNSWPSH 135
            +  + V  S VSV+MPGD +P+++A PAP PC  E   WPSH
Sbjct: 72  KASMVPVTTSDVSVVMPGDKLPSYVALPAPFPCRREGIRWPSH 114


>AT1G58007.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G09812.1); Has 91 Blast hits to 91 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:21446237-21447059 REVERSE
           LENGTH=115
          Length = 115

 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 33  SSVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXXXGDVESQMGFGGKLGY 92
           SS+NA+SFGFVATAILI MF++MAI E                             KL  
Sbjct: 21  SSMNAISFGFVATAILILMFIIMAILEHLFRSDHSSSYDVDDSSQFQ---------KLAE 71

Query: 93  PSPKMSVYDSGVSVLMPGDAIPTFIAHPAPAPCCPERNSWPSH 135
            +  + V  S VSV+MPGD +P+++A PAP PC  E   WPSH
Sbjct: 72  KASMVPVTTSDVSVVMPGDKLPSYVALPAPFPCRREGIRWPSH 114


>AT4G28170.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G11120.2); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:13981635-13982575 FORWARD LENGTH=143
          Length = 143

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 17/117 (14%)

Query: 6   HNNNSNGWPPTGAPLNLQRDEHWSSFDSSVNAVSFGFVATAILISMFLVMAIFERFLXXX 65
           H++   G   T  PL    +E    F+SSVNAV FG VAT +LI++FL++A FERF+   
Sbjct: 36  HDHRRFG---TAGPLAAD-EEGQGRFESSVNAVPFGLVATGVLIAIFLLIAFFERFMFVK 91

Query: 66  XXXXXXXXXXXXGDVESQMGFGGKLGYPSPKMSVYDSGVSVLMPGDAIPTFIAHPAP 122
                                     + SPKM V    +SVLMPG+ +PTFIA P P
Sbjct: 92  PTPSPPLDQKFP-------------PFASPKMDVCKREISVLMPGEDVPTFIAQPCP 135


>AT1G09812.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:3187817-3188580 FORWARD
           LENGTH=128
          Length = 128

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 28  WSSFDSSVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXXXGDVESQMGFG 87
           W S  +S+NA+SFGFVATAILISMFL+MAIFE                     +    F 
Sbjct: 21  WRS-STSMNAISFGFVATAILISMFLIMAIFEHLFRPENSSFDSPHQIRQRQRDGSSQFQ 79

Query: 88  GKLGYPSPKMSVYDSGVSVLMPGDAIPTFIAHPAPAPCCPERNSWP 133
                 S         VSV+MPG+ +P+ IA PAP PC  E   WP
Sbjct: 80  KLADQASMVPVSTVVDVSVVMPGEKLPSHIALPAPLPCRREGIHWP 125