Miyakogusa Predicted Gene

Lj4g3v0450050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450050.1 Non Chatacterized Hit- tr|I3S1K1|I3S1K1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.34,0,N-terminal domain of the delta subunit of the F1F0-ATP
synthase,F1F0 ATP synthase OSCP/delta subunit,CUFF.47323.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13450.1 | Symbols: ATP5 | delta subunit of Mt ATP synthase |...   219   1e-57
AT5G13450.2 | Symbols: ATP5 | delta subunit of Mt ATP synthase |...   171   6e-43

>AT5G13450.1 | Symbols: ATP5 | delta subunit of Mt ATP synthase |
           chr5:4310558-4311941 REVERSE LENGTH=238
          Length = 238

 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 158/241 (65%), Gaps = 6/241 (2%)

Query: 4   LCNRVRSGIALSNKLGF---LTSHRSSTLVAPLASRNYSTHVPGQKDTKIKVPLAMFGGS 60
           + NR RSGI+    +     ++S RS +L   L  R Y+T    Q    +KVP+A+ G +
Sbjct: 1   MANRFRSGISFFKTIAVTDSVSSVRSKSLFPAL--RTYAT-ASAQTTANVKVPIALVGEN 57

Query: 61  GNYASALYIXXXXXXXXXXXDSELHQFVEAVKNSSLVSQFVKDISVAKDVRVKAIEEISR 120
           GN+AS LYI           +++L + +EA+K + + +QF KD SV +  R+ AI +   
Sbjct: 58  GNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACD 117

Query: 121 EAKFAEVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFXXXXXXXXXX 180
           +AKFAE TKNFL ++AENG+LKN+D I K+F +L  A++G+VK  VTTV           
Sbjct: 118 QAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKEL 177

Query: 181 XXTVQEIIGSGAKVSLEQKIDPSILGGLVLEFSQKVFDMSIRTRAQQMERILREPINISN 240
             T+QEIIG+G K+++EQKIDPSI GGL++EF QKV DMSIRTRAQQMER+LREP++ +N
Sbjct: 178 TETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNN 237

Query: 241 I 241
           +
Sbjct: 238 L 238


>AT5G13450.2 | Symbols: ATP5 | delta subunit of Mt ATP synthase |
           chr5:4310558-4311941 REVERSE LENGTH=190
          Length = 190

 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 111/158 (70%)

Query: 84  LHQFVEAVKNSSLVSQFVKDISVAKDVRVKAIEEISREAKFAEVTKNFLVVVAENGRLKN 143
           L  +  A   ++   +F KD SV +  R+ AI +   +AKFAE TKNFL ++AENG+LKN
Sbjct: 33  LRTYATASAQTTANVKFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKN 92

Query: 144 IDTIAKRFGELAMAYKGEVKATVTTVFXXXXXXXXXXXXTVQEIIGSGAKVSLEQKIDPS 203
           +D I K+F +L  A++G+VK  VTTV             T+QEIIG+G K+++EQKIDPS
Sbjct: 93  LDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPS 152

Query: 204 ILGGLVLEFSQKVFDMSIRTRAQQMERILREPINISNI 241
           I GGL++EF QKV DMSIRTRAQQMER+LREP++ +N+
Sbjct: 153 IYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 190