Miyakogusa Predicted Gene
- Lj4g3v0446740.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0446740.1 tr|G7JRS3|G7JRS3_MEDTR Vacuolar protein
sorting-associated protein-like protein OS=Medicago
truncatu,91.18,0,VACUOLAR PROTEIN SORTING 28, ISOFORM 2
(VPS28),Vacuolar protein sorting-associated, VPS28;
Endosomal,CUFF.47179.1
(175 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05000.2 | Symbols: VPS28-1 | Vacuolar protein sorting-associ... 288 1e-78
AT4G05000.1 | Symbols: VPS28-2 | Vacuolar protein sorting-associ... 288 1e-78
AT4G21560.3 | Symbols: VPS28-1 | vacuolar protein sorting-associ... 274 3e-74
AT4G21560.2 | Symbols: VPS28-1 | vacuolar protein sorting-associ... 274 3e-74
AT4G21560.1 | Symbols: VPS28-1 | vacuolar protein sorting-associ... 274 3e-74
>AT4G05000.2 | Symbols: VPS28-1 | Vacuolar protein
sorting-associated protein VPS28 family protein |
chr4:2563953-2564585 FORWARD LENGTH=210
Length = 210
Score = 288 bits (737), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 132/171 (77%), Positives = 151/171 (88%)
Query: 5 MEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLS 64
MEVKLWNDKREREMY+NFAEL+AIIKATE+LEKAY+RD+I+P EYE ECQKLI HFKTLS
Sbjct: 2 MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLS 61
Query: 65 STLRDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRXXXXXXXXXXXXXVAECVQN 124
+TL+DTVP+I+RFADTY+M+CPAA+ RLV SG+PATVEHR VAECVQN
Sbjct: 62 ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121
Query: 125 FITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILPPDFEGKTKRKEWIAR 175
FITSMDSLKLNM+AVDQV+PLLSDL ASLNKL+ILPPDFEGKTK KEW++R
Sbjct: 122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSR 172
>AT4G05000.1 | Symbols: VPS28-2 | Vacuolar protein
sorting-associated protein VPS28 family protein |
chr4:2563953-2564585 FORWARD LENGTH=210
Length = 210
Score = 288 bits (737), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 132/171 (77%), Positives = 151/171 (88%)
Query: 5 MEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLS 64
MEVKLWNDKREREMY+NFAEL+AIIKATE+LEKAY+RD+I+P EYE ECQKLI HFKTLS
Sbjct: 2 MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLS 61
Query: 65 STLRDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRXXXXXXXXXXXXXVAECVQN 124
+TL+DTVP+I+RFADTY+M+CPAA+ RLV SG+PATVEHR VAECVQN
Sbjct: 62 ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121
Query: 125 FITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILPPDFEGKTKRKEWIAR 175
FITSMDSLKLNM+AVDQV+PLLSDL ASLNKL+ILPPDFEGKTK KEW++R
Sbjct: 122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSR 172
>AT4G21560.3 | Symbols: VPS28-1 | vacuolar protein
sorting-associated protein 28 homolog 1 |
chr4:11469037-11469666 REVERSE LENGTH=209
Length = 209
Score = 274 bits (700), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 130/171 (76%), Positives = 147/171 (85%)
Query: 5 MEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLS 64
MEVKLWNDKREREMY+NFAELYAIIKATE+LEKAY+RD+ISP EYE ECQKLI HFKTLS
Sbjct: 1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLS 60
Query: 65 STLRDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRXXXXXXXXXXXXXVAECVQN 124
++L+D VP+I+RFA+TY+M+C AA+ RLV SGVPATVEHR VAECVQN
Sbjct: 61 ASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120
Query: 125 FITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILPPDFEGKTKRKEWIAR 175
FITSMDSLKLNM+AVDQV+PLLSDL ASLNKL+ILPPDFEGK K KEW+ R
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLR 171
>AT4G21560.2 | Symbols: VPS28-1 | vacuolar protein
sorting-associated protein 28 homolog 1 |
chr4:11469037-11469666 REVERSE LENGTH=209
Length = 209
Score = 274 bits (700), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 130/171 (76%), Positives = 147/171 (85%)
Query: 5 MEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLS 64
MEVKLWNDKREREMY+NFAELYAIIKATE+LEKAY+RD+ISP EYE ECQKLI HFKTLS
Sbjct: 1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLS 60
Query: 65 STLRDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRXXXXXXXXXXXXXVAECVQN 124
++L+D VP+I+RFA+TY+M+C AA+ RLV SGVPATVEHR VAECVQN
Sbjct: 61 ASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120
Query: 125 FITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILPPDFEGKTKRKEWIAR 175
FITSMDSLKLNM+AVDQV+PLLSDL ASLNKL+ILPPDFEGK K KEW+ R
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLR 171
>AT4G21560.1 | Symbols: VPS28-1 | vacuolar protein
sorting-associated protein 28 homolog 1 |
chr4:11469037-11469666 REVERSE LENGTH=209
Length = 209
Score = 274 bits (700), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 130/171 (76%), Positives = 147/171 (85%)
Query: 5 MEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPQEYELECQKLIAHFKTLS 64
MEVKLWNDKREREMY+NFAELYAIIKATE+LEKAY+RD+ISP EYE ECQKLI HFKTLS
Sbjct: 1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLS 60
Query: 65 STLRDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRXXXXXXXXXXXXXVAECVQN 124
++L+D VP+I+RFA+TY+M+C AA+ RLV SGVPATVEHR VAECVQN
Sbjct: 61 ASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120
Query: 125 FITSMDSLKLNMIAVDQVHPLLSDLYASLNKLTILPPDFEGKTKRKEWIAR 175
FITSMDSLKLNM+AVDQV+PLLSDL ASLNKL+ILPPDFEGK K KEW+ R
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLR 171