Miyakogusa Predicted Gene

Lj4g3v0445610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0445610.1 tr|E3SER8|E3SER8_ELAGV F-box protein OS=Elaeis
guineensis var. tenera GN=FB1 PE=2 SV=1,43.06,5e-18,FBOX,F-box domain,
cyclin-like,CUFF.47162.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61340.1 | Symbols:  | F-box family protein | chr1:22628526-2...   112   8e-26
AT4G21510.1 | Symbols:  | F-box family protein | chr4:11446193-1...   100   5e-22
AT4G05010.1 | Symbols:  | F-box family protein | chr4:2567474-25...    94   3e-20
AT1G61340.2 | Symbols:  | F-box family protein | chr1:22628526-2...    91   3e-19
AT4G35930.1 | Symbols:  | F-box family protein | chr4:17019482-1...    65   1e-11

>AT1G61340.1 | Symbols:  | F-box family protein |
           chr1:22628526-22629741 FORWARD LENGTH=185
          Length = 185

 Score =  112 bits (281), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 110/163 (67%), Gaps = 17/163 (10%)

Query: 1   MALGFEGYSFARTLSMGRKRVVVTNNVE-NDSVMT-PL-KRVCSGRINFNSE-RSR-LEA 55
           + LG E   + R    GRKR+++++  E  DS+ T P+ K++C  +    +E +SR LE 
Sbjct: 26  LGLGLEFVQYKR--GFGRKRILISSGDEMEDSIFTSPVGKKLCDDKTTSVAEGQSRELED 83

Query: 56  LPLDVLIRVLCGVDHEDLEQLLHVSKTIREATEIARDFHFEYSTPKKKT------FGFRS 109
           LPLD+L+R++CGV+HEDL+QL HVSKTIREAT IA+  HF YSTP+K +      FG+  
Sbjct: 84  LPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVFHHGRFGWDK 143

Query: 110 PFDIEDANEFEEIEAPKAPLRKSVK-SRLS-GKNLGGISVALF 150
           PF  +  ++ EEIEAP APL+K  + SR++  K+  G+SVALF
Sbjct: 144 PF--DVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSGVSVALF 184


>AT4G21510.1 | Symbols:  | F-box family protein |
           chr4:11446193-11447025 REVERSE LENGTH=225
          Length = 225

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 93/161 (57%), Gaps = 25/161 (15%)

Query: 13  TLSMGRKRVVVTNNV---------------ENDSVMTPLKRVCSGRINF----NSERSRL 53
           T  +GRKR+++++ V               E+  V + LKR  S RI      +SE+SRL
Sbjct: 66  TRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRS-RITIVSSSSSEKSRL 124

Query: 54  EALPLDVLIRVLCGVDHEDLEQLLHVSKTIREATEIARDFHFEYSTPKKKTFGFRSPFDI 113
           E LP D+LIRV+CGVDHEDL+ L  VSK+IREA+ +A+  HF Y+TP KKT  FR+  D+
Sbjct: 125 ECLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTP-KKTRAFRNSIDL 183

Query: 114 EDA----NEFEEIEAPKAPLRKSVKSRLSGKNLGGISVALF 150
           E+     ++ ++IE P AP           + L  +S ALF
Sbjct: 184 EEVSDSRHQEDDIEPPNAPRHYRWTKAKRKEQLSSVSAALF 224


>AT4G05010.1 | Symbols:  | F-box family protein |
           chr4:2567474-2568162 FORWARD LENGTH=164
          Length = 164

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 89/151 (58%), Gaps = 14/151 (9%)

Query: 7   GYSFAR-TLSMGRKRVVVTNNV-ENDSVMTPLKRVCSGRINFNSERSRLEALPLDVLIRV 64
           G  F R T  +GRKR++++    ENDS   P+KR         S RS LE L  D+LIRV
Sbjct: 20  GLGFVRFTRGLGRKRILISKRAPENDS--PPVKR--PSHETTESCRSLLETLHQDILIRV 75

Query: 65  LCGVDHEDLEQLLHVSKTIREATEIARDFHFEYSTPKKKTFGFRSPFDIED-----ANEF 119
           LC VDHEDL  L  VSKTIR+A   A+  HF+YSTPKK+   FR    I D     +++ 
Sbjct: 76  LCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKR-LPFRDAILILDSNSNSSSQD 134

Query: 120 EEIEAPKAPLRKSVKSRLSGKNLGGISVALF 150
           +E+E P AP+R+   +R S  +L  IS+ LF
Sbjct: 135 DEMEPPNAPIRRRFINRES--DLSKISMVLF 163


>AT1G61340.2 | Symbols:  | F-box family protein |
           chr1:22628526-22629741 FORWARD LENGTH=231
          Length = 231

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 112/209 (53%), Gaps = 63/209 (30%)

Query: 1   MALGFEGYSFARTLSMGRKRVVVTNNVE-NDSVMT-PL-KRVCSGRINFNSE-RSR-LEA 55
           + LG E   + R    GRKR+++++  E  DS+ T P+ K++C  +    +E +SR LE 
Sbjct: 26  LGLGLEFVQYKR--GFGRKRILISSGDEMEDSIFTSPVGKKLCDDKTTSVAEGQSRELED 83

Query: 56  LPLDVLIRV----------------------------------------------LCGVD 69
           LPLD+L+RV                                              +CGV+
Sbjct: 84  LPLDILLRVFVNSASVNQIELKVESFLFSEIQNRNGNEKMFNFFHIWKTFVIVRIICGVE 143

Query: 70  HEDLEQLLHVSKTIREATEIARDFHFEYSTPKKKT------FGFRSPFDIEDANEFEEIE 123
           HEDL+QL HVSKTIREAT IA+  HF YSTP+K +      FG+  PFD+ED +  EEIE
Sbjct: 144 HEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDD--EEIE 201

Query: 124 APKAPLRKSVK-SRLS-GKNLGGISVALF 150
           AP APL+K  + SR++  K+  G+SVALF
Sbjct: 202 APGAPLQKRYRLSRINRNKDDSGVSVALF 230


>AT4G35930.1 | Symbols:  | F-box family protein |
           chr4:17019482-17020744 FORWARD LENGTH=321
          Length = 321

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 13/113 (11%)

Query: 51  SRLEALPLDVLIRVLCGVDHEDLEQLLHVSKTIREATEIARDFHFEYSTPKKKTFGF--- 107
           S+LE+LP+D+L++++C + H+ L+ + HVS+ IR AT +AR +HF Y+TP +        
Sbjct: 160 SQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRSRQEMLRV 219

Query: 108 -------RSPFDIEDANE--FEEIEAPKAPLRKS-VKSRLSGKNLGGISVALF 150
                  R PF   D N         PKAP       SR     +  I+  LF
Sbjct: 220 MTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLF 272