Miyakogusa Predicted Gene

Lj4g3v0445370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0445370.1 Non Chatacterized Hit- tr|D8RW05|D8RW05_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,43.9,1e-18,coiled-coil,NULL; seg,NULL,CUFF.47137.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07840.1 | Symbols:  | Sas10/Utp3/C1D family | chr1:2424603-2...   117   5e-27
AT1G07840.2 | Symbols:  | Sas10/Utp3/C1D family | chr1:2424603-2...   117   5e-27
AT1G07840.3 | Symbols:  | Sas10/Utp3/C1D family | chr1:2424603-2...   101   3e-22

>AT1G07840.1 | Symbols:  | Sas10/Utp3/C1D family |
           chr1:2424603-2426425 FORWARD LENGTH=312
          Length = 312

 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 102/145 (70%), Gaps = 8/145 (5%)

Query: 1   MLVSREDLTPQDGHDAYRPVKFAPTSMDQDKTSKQERNALRREKEILKESKHSSFIRTLM 60
           +L  +ED    DG   YRP KFAP SM +DKTSKQER+A R+EK   +++  +++++ ++
Sbjct: 155 LLADKEDDQEDDG--VYRPPKFAPMSM-EDKTSKQERDAARKEKHFFRQATENTYMKDVL 211

Query: 61  NDIEEKPEEIRDHEGS-SKEVERHIAKMEERARQEEELFNRVPLTKHERKREKYLKKSRN 119
           +D+E++PEEIRD+ G  S E +R +A+ E + + EEELF R P TK ++KREK LK S +
Sbjct: 212 DDLEDRPEEIRDYYGVESNEQKRFMAQYERQQKAEEELFTRAPRTKEDKKREKRLKSS-S 270

Query: 120 GLDGLTESFFDEIKTLPFEDETGEQ 144
           GL  LTE+F+D+IK   F D+ GE+
Sbjct: 271 GLHELTENFYDDIK---FLDKDGEK 292


>AT1G07840.2 | Symbols:  | Sas10/Utp3/C1D family |
           chr1:2424603-2426425 FORWARD LENGTH=312
          Length = 312

 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 102/145 (70%), Gaps = 8/145 (5%)

Query: 1   MLVSREDLTPQDGHDAYRPVKFAPTSMDQDKTSKQERNALRREKEILKESKHSSFIRTLM 60
           +L  +ED    DG   YRP KFAP SM +DKTSKQER+A R+EK   +++  +++++ ++
Sbjct: 155 LLADKEDDQEDDG--VYRPPKFAPMSM-EDKTSKQERDAARKEKHFFRQATENTYMKDVL 211

Query: 61  NDIEEKPEEIRDHEGS-SKEVERHIAKMEERARQEEELFNRVPLTKHERKREKYLKKSRN 119
           +D+E++PEEIRD+ G  S E +R +A+ E + + EEELF R P TK ++KREK LK S +
Sbjct: 212 DDLEDRPEEIRDYYGVESNEQKRFMAQYERQQKAEEELFTRAPRTKEDKKREKRLKSS-S 270

Query: 120 GLDGLTESFFDEIKTLPFEDETGEQ 144
           GL  LTE+F+D+IK   F D+ GE+
Sbjct: 271 GLHELTENFYDDIK---FLDKDGEK 292


>AT1G07840.3 | Symbols:  | Sas10/Utp3/C1D family |
           chr1:2424603-2426131 FORWARD LENGTH=279
          Length = 279

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 85/126 (67%), Gaps = 4/126 (3%)

Query: 1   MLVSREDLTPQDGHDAYRPVKFAPTSMDQDKTSKQERNALRREKEILKESKHSSFIRTLM 60
           +L  +ED    DG   YRP KFAP SM +DKTSKQER+A R+EK   +++  +++++ ++
Sbjct: 155 LLADKEDDQEDDG--VYRPPKFAPMSM-EDKTSKQERDAARKEKHFFRQATENTYMKDVL 211

Query: 61  NDIEEKPEEIRDHEGS-SKEVERHIAKMEERARQEEELFNRVPLTKHERKREKYLKKSRN 119
           +D+E++PEEIRD+ G  S E +R +A+ E + + EEELF R P TK ++KREK LK S  
Sbjct: 212 DDLEDRPEEIRDYYGVESNEQKRFMAQYERQQKAEEELFTRAPRTKEDKKREKRLKSSSG 271

Query: 120 GLDGLT 125
            +  L 
Sbjct: 272 YVFALV 277