Miyakogusa Predicted Gene

Lj4g3v0423110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0423110.1 tr|A9T954|A9T954_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_168735,53.21,2e-17,seg,NULL,CUFF.47119.1
         (633 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11480.1 | Symbols:  | eukaryotic translation initiation fact...   294   2e-79
AT1G11480.2 | Symbols:  | eukaryotic translation initiation fact...   245   7e-65

>AT1G11480.1 | Symbols:  | eukaryotic translation initiation
           factor-related | chr1:3864368-3866750 REVERSE LENGTH=578
          Length = 578

 Score =  294 bits (752), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 247/644 (38%), Positives = 335/644 (52%), Gaps = 77/644 (11%)

Query: 1   MSKKKVSGNTMTLKDFHGGSIPSDLPLPSAPGVTVRTS-DRSGFDRPSSWGAPMGRPDHW 59
           MSKKK +   MTLKDFHGGSIPSDLPLPSAPGVT +   DR  FDR + WG  +GRPD  
Sbjct: 1   MSKKKSAA--MTLKDFHGGSIPSDLPLPSAPGVTPKVIPDRPVFDR-APWGNSIGRPDQR 57

Query: 60  SRPHTSPATRHYDDKTPFLSHTAPIGRNFDEDERKPLDGGSAPRRTVSDESTRAPPPSRV 119
           +RP +S A R+ DDK+ FL H   IGRNF EDERKPLDG SAPRR VSD+  R    +R+
Sbjct: 58  ARPSSSHAIRNLDDKSLFLPHNVNIGRNFSEDERKPLDGHSAPRRVVSDDVFRF-ANNRL 116

Query: 120 EVKPEYGLGGSSLGRQVAPVSPAAVGTVNSYSARLTEAVHTGMNTHSLGGSKERXXXXXX 179
           E+K +  L G   G    P++ +  G +                 +S+ G+         
Sbjct: 117 EMKADSVLAGRHSGWAAGPLTHSGTGNIE----------------NSVSGN--------- 151

Query: 180 XXXXXXXYPNVWSMRKEVANA-VEAEQSARSGANAVSKLAHASALEKVSSGRWQSK-AAH 237
                  + N+W+ RKEV+ A  E  QS  +   AVS L H SAL++VSSG WQSK    
Sbjct: 152 -------HSNIWNGRKEVSVANNEPGQSPWTKQPAVSNLVHTSALDQVSSGGWQSKLLVP 204

Query: 238 YQNDAELVRSPEAESRQXXXXXXXXXXXXMDAVGEKEYYDAMLARQAERGLGIDNQMQGG 297
            Q   ++V+  E ++R             + + G + +         ER L  ++ +Q G
Sbjct: 205 SQMGFDVVKHSEIDTR------VYKTNSPVISQGVEPH-----GTHVERALIAEDGIQRG 253

Query: 298 RNELLDYEKSGVSKYPEVR-PRSVPYQSDGVQPARNVGKLVGSELKNPVPSEPTEXXXXX 356
           +    +YEK     Y + +  + V   +D   P  +  K  G  ++   PSE  E     
Sbjct: 254 KKLSREYEKIPGPTYVDAKEAKIVANTNDKPHPKYSDVKPAGHLVQPTAPSEVVERPKLN 313

Query: 357 XXXXXXXXESSEPSVTEYPQGYRLGNDSS-HVETAHQAHGHANFVKPVSAGTESGKELGQ 415
                   ES E  V +     +L N +S  ++  +      N  K   +  E   +  +
Sbjct: 314 LLPRTKPLESVEKPVND----EKLENSASVLIQRENATQKSFNNSKSGLSTDEIPNQPAE 369

Query: 416 RPKLNLKPRSQPLEKLEVNTETGRNALFGGGRPRELVLKERGVDDVAINTYDVVENSNRV 475
           RPKLNLKP +Q LE+ EV TE  R+A+FGG RPRELVLKERG+D+   +  D   +   +
Sbjct: 370 RPKLNLKPVAQLLEQPEVKTEKDRSAVFGGARPRELVLKERGIDEPEHHKLDQPTDRMVL 429

Query: 476 EPNILKAEKLPDPSIQSRHGEKANDAPLDQRTGRKPERKEQR--VDGERGHSQKRNWRGG 533
           +P     E++P+ + Q     +   +P D RT RK ++K+ R   D  R  +Q+RNWR  
Sbjct: 430 KP----IERVPEHASQ-----RPVSSPRDMRT-RKFDQKDGRNVSDIARSETQRRNWREN 479

Query: 534 DNRRNARETERQQPAPERPASPETWRKPVEQPKPSQGVGGPRNGRAASAVELAQAFSRSV 593
           +N ++AR+ ++ Q     P SPETWRKPV Q   S    G R+G+AASA+ELAQA+S   
Sbjct: 480 EN-KSARQQQQTQEKTRHP-SPETWRKPVPQKLDSPNGTGIRHGKAASALELAQAYS-PF 536

Query: 594 SDPKVNDRFSGQNGLNTGR---TQQMPFSRLVGPTPR-PQINGY 633
           SDPK        N  N  R   TQQ PFSRLVG T    QINGY
Sbjct: 537 SDPKSG--IGSSNSFNKSRNNQTQQQPFSRLVGSTTTGRQINGY 578


>AT1G11480.2 | Symbols:  | eukaryotic translation initiation
           factor-related | chr1:3864368-3866707 REVERSE LENGTH=565
          Length = 565

 Score =  245 bits (626), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 304/605 (50%), Gaps = 74/605 (12%)

Query: 39  DRSGFDRPSSWGAPMGRPDHWSRPHTSPATRHYDDKTPFLSHTAPIGRNFDEDERKPLDG 98
           DR  FDR + WG  +GRPD  +RP +S A R+ DDK+ FL H   IGRNF EDERKPLDG
Sbjct: 25  DRPVFDR-APWGNSIGRPDQRARPSSSHAIRNLDDKSLFLPHNVNIGRNFSEDERKPLDG 83

Query: 99  GSAPRRTVSDESTRAPPPSRVEVKPEYGLGGSSLGRQVAPVSPAAVGTVNSYSARLTEAV 158
            SAPRR VSD+  R    +R+E+K +  L G   G    P++ +  G +           
Sbjct: 84  HSAPRRVVSDDVFRF-ANNRLEMKADSVLAGRHSGWAAGPLTHSGTGNIE---------- 132

Query: 159 HTGMNTHSLGGSKERXXXXXXXXXXXXXYPNVWSMRKEVANA-VEAEQSARSGANAVSKL 217
                 +S+ G+                + N+W+ RKEV+ A  E  QS  +   AVS L
Sbjct: 133 ------NSVSGN----------------HSNIWNGRKEVSVANNEPGQSPWTKQPAVSNL 170

Query: 218 AHASALEKVSSGRWQSK-AAHYQNDAELVRSPEAESRQXXXXXXXXXXXXMDAVGEKEYY 276
            H SAL++VSSG WQSK     Q   ++V+  E ++R             + + G + + 
Sbjct: 171 VHTSALDQVSSGGWQSKLLVPSQMGFDVVKHSEIDTR------VYKTNSPVISQGVEPH- 223

Query: 277 DAMLARQAERGLGIDNQMQGGRNELLDYEKSGVSKYPEVR-PRSVPYQSDGVQPARNVGK 335
                   ER L  ++ +Q G+    +YEK     Y + +  + V   +D   P  +  K
Sbjct: 224 ----GTHVERALIAEDGIQRGKKLSREYEKIPGPTYVDAKEAKIVANTNDKPHPKYSDVK 279

Query: 336 LVGSELKNPVPSEPTEXXXXXXXXXXXXXESSEPSVTEYPQGYRLGNDSS-HVETAHQAH 394
             G  ++   PSE  E             ES E  V +     +L N +S  ++  +   
Sbjct: 280 PAGHLVQPTAPSEVVERPKLNLLPRTKPLESVEKPVND----EKLENSASVLIQRENATQ 335

Query: 395 GHANFVKPVSAGTESGKELGQRPKLNLKPRSQPLEKLEVNTETGRNALFGGGRPRELVLK 454
              N  K   +  E   +  +RPKLNLKP +Q LE+ EV TE  R+A+FGG RPRELVLK
Sbjct: 336 KSFNNSKSGLSTDEIPNQPAERPKLNLKPVAQLLEQPEVKTEKDRSAVFGGARPRELVLK 395

Query: 455 ERGVDDVAINTYDVVENSNRVEPNILKAEKLPDPSIQSRHGEKANDAPLDQRTGRKPERK 514
           ERG+D+   +  D   +   ++P     E++P+ + Q     +   +P D RT RK ++K
Sbjct: 396 ERGIDEPEHHKLDQPTDRMVLKP----IERVPEHASQ-----RPVSSPRDMRT-RKFDQK 445

Query: 515 EQR--VDGERGHSQKRNWRGGDNRRNARETERQQPAPERPASPETWRKPVEQPKPSQGVG 572
           + R   D  R  +Q+RNWR  +N ++AR+ ++ Q     P SPETWRKPV Q   S    
Sbjct: 446 DGRNVSDIARSETQRRNWRENEN-KSARQQQQTQEKTRHP-SPETWRKPVPQKLDSPNGT 503

Query: 573 GPRNGRAASAVELAQAFSRSVSDPKVNDRFSGQNGLNTGR---TQQMPFSRLVGPTPR-P 628
           G R+G+AASA+ELAQA+S   SDPK        N  N  R   TQQ PFSRLVG T    
Sbjct: 504 GIRHGKAASALELAQAYS-PFSDPKSG--IGSSNSFNKSRNNQTQQQPFSRLVGSTTTGR 560

Query: 629 QINGY 633
           QINGY
Sbjct: 561 QINGY 565