Miyakogusa Predicted Gene

Lj4g3v0423070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0423070.1 Non Chatacterized Hit- tr|G7IK27|G7IK27_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,55.21,3e-19,seg,NULL,CUFF.47111.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16170.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    52   1e-07

>AT1G16170.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; EXPRESSED IN: 24 plant
          structures; EXPRESSED DURING: 15 growth stages; BEST
          Arabidopsis thaliana protein match is: unknown protein
          (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in
          13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:5538874-5539152 REVERSE
          LENGTH=92
          Length = 92

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 26 NELGSWSTXXXXXXXXXXXXXXXXXXCTVYLFFAVTLGTR-DPCFGLSESQRASCNMEQI 84
          +ELGSWST                  CTVYL+FAVTLG R   C+GL+   +A C ++ +
Sbjct: 22 DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTLGARHSSCYGLTGKDKAMCQLQLV 81

Query: 85 ----KGKVKY 90
              KGK+K+
Sbjct: 82 QALSKGKLKF 91