Miyakogusa Predicted Gene
- Lj4g3v0412640.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0412640.3 tr|B9IP66|B9IP66_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_573662 PE=4
SV=1,62.82,3e-19,SQUALENE MONOOXYGENASE,NULL; SE,Squalene
epoxidase,CUFF.48671.3
(103 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G58440.1 | Symbols: XF1, SQE1 | FAD/NAD(P)-binding oxidoreduc... 148 8e-37
AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:177440... 142 4e-35
AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:972394... 122 3e-29
AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:818... 97 3e-21
AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding oxidoredu... 91 1e-19
AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 | chr5:81... 82 7e-17
AT5G24150.2 | Symbols: SQP1 | FAD/NAD(P)-binding oxidoreductase ... 72 8e-14
>AT1G58440.1 | Symbols: XF1, SQE1 | FAD/NAD(P)-binding
oxidoreductase family protein | chr1:21714094-21717246
REVERSE LENGTH=531
Length = 531
Score = 148 bits (373), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 2 KELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRI 61
E+++A DYL LG + + G SLLSGLNPRPL++V HFFAVA+YGV RLL PFPSPKRI
Sbjct: 424 NEMREACFDYLGLGGMCTSGPVSLLSGLNPRPLTLVCHFFAVAVYGVIRLLIPFPSPKRI 483
Query: 62 WIGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPPV 102
W+GA+LISGA+ I+FPIIKAEG+RQMFFPATVPAYY P
Sbjct: 484 WLGAKLISGASGIIFPIIKAEGVRQMFFPATVPAYYYKAPT 524
>AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 |
chr4:17744085-17746426 FORWARD LENGTH=525
Length = 525
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 82/96 (85%)
Query: 3 ELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIW 62
E+++A DYLSLG V S G +LLSGLNPRP+S+VLHFFAVAI+GVGRLL P PS KR+W
Sbjct: 419 EMRRACFDYLSLGGVCSSGPVALLSGLNPRPMSLVLHFFAVAIFGVGRLLVPLPSVKRLW 478
Query: 63 IGARLISGAACILFPIIKAEGLRQMFFPATVPAYYR 98
+GARLIS A+ I+FPIIKAEG+RQMFFP T+PA YR
Sbjct: 479 LGARLISSASGIIFPIIKAEGVRQMFFPRTIPAIYR 514
>AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 |
chr2:9723947-9726270 REVERSE LENGTH=585
Length = 585
Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 82/99 (82%)
Query: 3 ELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIW 62
E+++A DYLSLG VFS G +LLSGLNPRPLS+VLHFFAVAIY V RL+ PFPS + W
Sbjct: 487 EMREACFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFPSIESFW 546
Query: 63 IGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPP 101
+GAR+IS A+ I+FPIIKAEG+RQMFFP T+PA YR PP
Sbjct: 547 LGARIISSASSIIFPIIKAEGVRQMFFPRTIPAIYRAPP 585
>AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 |
chr5:8183291-8186601 REVERSE LENGTH=517
Length = 517
Score = 96.7 bits (239), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 61/95 (64%)
Query: 4 LQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIWI 63
++Q DYL G + G+ +LL G+NPRPLS+V H A+ + +G+LL PFPSP RIW
Sbjct: 415 MRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSPFPSPLRIWH 474
Query: 64 GARLISGAACILFPIIKAEGLRQMFFPATVPAYYR 98
+L A +L P +KAEG+ QM FPA AY++
Sbjct: 475 SLKLFGLAMKMLVPNLKAEGVSQMLFPANAAAYHK 509
>AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding
oxidoreductase family protein | chr5:8172594-8175395
REVERSE LENGTH=516
Length = 516
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 59/95 (62%)
Query: 4 LQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIWI 63
++Q DYLS G + G+ +LL G+NPRP+S++ H A+ + +G LL PFPSP RIW
Sbjct: 414 MRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWH 473
Query: 64 GARLISGAACILFPIIKAEGLRQMFFPATVPAYYR 98
RL A +L P +KAEG+ QM FP AY +
Sbjct: 474 SLRLFGLAMKMLVPHLKAEGVSQMLFPVNAAAYSK 508
>AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 |
chr5:8164547-8167669 REVERSE LENGTH=516
Length = 516
Score = 82.0 bits (201), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 57/95 (60%)
Query: 4 LQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIWI 63
++Q +YL+ G + GL ++L G+NP PL++VLH A+ + +G LL PFPSP+R W
Sbjct: 414 MRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLLSPFPSPRRFWH 473
Query: 64 GARLISGAACILFPIIKAEGLRQMFFPATVPAYYR 98
R+++ A +L + EG ++M P AY R
Sbjct: 474 SLRILAWALQMLGAHLVDEGFKEMLIPTNAAAYRR 508
>AT5G24150.2 | Symbols: SQP1 | FAD/NAD(P)-binding oxidoreductase
family protein | chr5:8172670-8175395 REVERSE LENGTH=490
Length = 490
Score = 72.0 bits (175), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 4 LQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIWI 63
++Q DYLS G + G+ +LL G+NPRP+S++ H A+ + +G LL PFPSP RIW
Sbjct: 414 MRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWH 473
Query: 64 GARLISG 70
RL G
Sbjct: 474 SLRLFVG 480