Miyakogusa Predicted Gene
- Lj4g3v0385920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0385920.1 tr|D7KHT7|D7KHT7_ARALL KH domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,26.57,2e-18,Eukaryotic type KH-domain (KH-domain type
I),NULL; KH_TYPE_1,K Homology domain, type 1; K homology
R,CUFF.47034.1
(584 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 247 2e-65
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 195 9e-50
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 195 9e-50
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 195 9e-50
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 176 4e-44
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 171 1e-42
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 164 2e-40
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 155 6e-38
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 155 6e-38
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 154 2e-37
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 122 6e-28
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 99 1e-20
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 95 2e-19
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 94 3e-19
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 93 4e-19
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 93 5e-19
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 92 1e-18
AT5G53060.2 | Symbols: | RNA-binding KH domain-containing prote... 60 4e-09
AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (lon... 60 5e-09
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 59 9e-09
AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (lon... 59 1e-08
AT2G25970.1 | Symbols: | KH domain-containing protein | chr2:11... 53 5e-07
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 199/645 (30%), Positives = 298/645 (46%), Gaps = 122/645 (18%)
Query: 17 VTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIR-IDDAPPDSPDRVIRIIS----KLD 71
V FRLLC A+R G++IGK G VI+ LQ T ++IR IDD P S +RV+ II+ K D
Sbjct: 19 VHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKD 78
Query: 72 ---------------------------GGE----------ALLRVFEKVL--DVAA--EA 90
GG+ ALLRVFE+++ D AA +
Sbjct: 79 ESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGDDAATVDG 138
Query: 91 DEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXXIRAETGCKIRVFS-DKLPAGTKPSDE 149
DE D + CR++ Q IR ++G +R+ S D++P P D
Sbjct: 139 DELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDV 198
Query: 150 IIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTTASRPYEGFQHGTFDVPTETCTDKHID 209
+I++ G + CL + + + P + F P ++
Sbjct: 199 VIQMNGKFSSVKKALLL----VTNCL-----QESGAPPT--WDECPFPQPGYPPEYHSME 247
Query: 210 HRQQKSSTLPDLSSRYNGNAYGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVI 269
+ Q P N + +V + +++EV FR+LC D+VG++I
Sbjct: 248 YHPQWDHPPP-------------NPMPEDVG---PFNRPVVEEEVAFRLLCPADKVGSLI 291
Query: 270 GKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSV 329
GKGG+ +RALQNE+GA+I ++ P + E+R+I I+A EN E R+ S AQ V+ V +R V
Sbjct: 292 GKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRH-SLAQDGVMRVHNRIV 350
Query: 330 EAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFP 389
E GF+ ++V ARL++ S +G L+GKGG ++SEMR+ATG IRV A +Q
Sbjct: 351 EIGFE--------PSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQAT 402
Query: 390 KCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMD 449
K + +D++VQ+ G VQDAL+ RLR+ +F G
Sbjct: 403 KYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPFMGPYPEPPP 462
Query: 450 HLSLSQNSNHPSSPWSWTPKSAGAINSRGSNDVG---------------RGLTPQNGDLE 494
Q +P+SP + G + R + G TPQ G
Sbjct: 463 PFGPRQ---YPASPDRYH-SPVGPFHERHCHGPGFDRPPGPGFDRPPSPMSWTPQPG--- 515
Query: 495 LVSGSKTAIV----------------SKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRL 538
+ G +V S+ ++T+ VEI++ + VYGE+ NL+ +
Sbjct: 516 -IDGHPGGMVPPDVNHGFALRNEPIGSENPVMTSANVEIVIPQAYLGHVYGENCSNLNYI 574
Query: 539 KQISGAKVTVHEPLPGASTRAIVISGTPDETQAAQSLLQAFILNG 583
KQ+SGA V VH+P G + +V+SGT D+ AQSLL AFIL G
Sbjct: 575 KQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLLHAFILCG 619
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 143/348 (41%), Gaps = 74/348 (21%)
Query: 252 KEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPV-VECEDRLITITAL---- 306
+ V FR+LC R GA+IGKGGS IR LQ+ TG+ I + + V E+R++ I A
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKK 76
Query: 307 ---------ENPESR--------------------YPSPAQKAVVLVFSRSVEAGFDRGV 337
ENP S PS AQ A++ VF R V V
Sbjct: 77 KDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGDDAATV 136
Query: 338 DFGS--KKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDN 395
D K ES R++++ NQV L+ KGG ++ ++R+ +G ++R+ + +Q P C
Sbjct: 137 DGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPG 196
Query: 396 DQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQ 455
D ++Q++G+F +V+ AL T L Q +G ++ S+
Sbjct: 197 DVVIQMNGKFSSVKKALLLVTNCL--------QESGAPPTWDECPFPQPGYPPEYHSMEY 248
Query: 456 NSNHPSSPWSWTPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTV 515
+ P + P+ G N + +
Sbjct: 249 HPQWDHPPPNPMPEDVGPFN------------------------------RPVVEEEVAF 278
Query: 516 EIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVIS 563
++ D + S+ G+ G + L+ SGA + V +P + R IVIS
Sbjct: 279 RLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVIS 326
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 9 GPSNGPT---QVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIR 65
GP N P +V FRLLC A +VGSLIGK G V+++LQ + A I++ D DS +R+I
Sbjct: 265 GPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIV 324
Query: 66 IISKLD-------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXX 118
I ++ + + ++RV +++++ E V RLL
Sbjct: 325 ISARENLERRHSLAQDGVMRVHNRIVEIGFEPSA------AVVARLLVHSPYIGRLLGKG 378
Query: 119 XXXXXXIRAETGCKIRVFS-DKLPAGTKPSDEIIEIQG 155
+R TG IRVF+ D+ DEI+++ G
Sbjct: 379 GHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIG 416
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 162/260 (62%), Gaps = 10/260 (3%)
Query: 176 PFDRTKTTA-SRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNS 234
PF+ A P+E F + P ET T + + R Q + L S + + + +
Sbjct: 371 PFEMVPRDAMGMPFESFPRDAYGRPIETMTQETL--RGQSADYLAHRYSTLDTHPHSFTT 428
Query: 235 LSAEVNRVSALDP----RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA 290
++ N + P ++V F+ILCS + G VIG GG +R L +ETGA I++
Sbjct: 429 SASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVG 488
Query: 291 PPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTAR 350
+ +CE+RLI +TA ENPE + SPAQKA++L+FSR E ++ +D G + SS+TAR
Sbjct: 489 NTLDDCEERLIAVTASENPECQ-SSPAQKAIMLIFSRLFELATNKILDNGPR--SSITAR 545
Query: 351 LVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQD 410
LV+ ++Q+GC++GKGG IVSEMRK TG I+++ Q PKC ++NDQ+VQI+G+F NV++
Sbjct: 546 LVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVRE 605
Query: 411 ALYNATGRLRDNLFVSTQNN 430
A+++ T RLRD++F ++ N
Sbjct: 606 AIFHITSRLRDSVFSNSMKN 625
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 163/346 (47%), Gaps = 48/346 (13%)
Query: 254 VTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA-----PPVVECEDRLITITALEN 308
+T R++ ++G V+GKGG + ++ TGA I I P + D+++ IT E
Sbjct: 542 ITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITG-EF 600
Query: 309 PESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSV--TARLVIQSNQVGCLIGKGG 366
P R +A+ + SR ++ F + K SS T R + + IG
Sbjct: 601 PNVR------EAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSIGSHQ 654
Query: 367 AIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQ--FLNVQDALYNATGRLRDNLF 424
++ + ++ R + + F + + + G ++ +D + R N
Sbjct: 655 SVSNPATNSSSLHRR--SEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFPD-----RFNPS 707
Query: 425 VSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNH----PSSPWSWTPKSAGAINSRGSN 480
+N G MDH S NS+H PS W+ P +A RG +
Sbjct: 708 AGYSHNFGRRFT-----------MDH---SDNSHHLTEAPSRLWASPPPAA----PRGLS 749
Query: 481 DVGRGLTPQNGDLELVSGSKTAIVS---KTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDR 537
D GL+ L S + S K+AIVTNTTVEI V + + VYGE G NL++
Sbjct: 750 DASGGLSSARAGHVLGSLHARLVFSSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQ 809
Query: 538 LKQISGAKVTVHEPLPGASTRAIVISGTPDETQAAQSLLQAFILNG 583
L+QISGA+V +HEP G S R IVISGTPD+TQAAQ+LL AFIL G
Sbjct: 810 LRQISGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 855
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 99/215 (46%), Gaps = 36/215 (16%)
Query: 16 QVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGGE- 74
FRLLC S VG++IGK+G VIK LQQ+T A+IR+++ P SPDRVI II++ D
Sbjct: 46 HAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSR 105
Query: 75 ---------------------------ALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSD 107
AL++VFE +AAEAD D VV CRLL++
Sbjct: 106 VKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFEL---LAAEADS----DTVV-CRLLTE 157
Query: 108 PAQXXXXXXXXXXXXXXIRAETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXX 167
+ IR ETGCKI + + LP DE++E++G
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 168 XXRIEECLPFDRTKTTASRPYEGFQHGTFDVPTET 202
++ C D+ + +RP E + P ET
Sbjct: 218 SRCLQNCQSIDKVRMVGNRPLEKEFQASLHRPIET 252
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 33/178 (18%)
Query: 256 FRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYP- 314
FR+LC VGAVIGK G+ I+ LQ TGA I + P DR+ITI A + +SR
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 315 -------------------SPAQKAVVLVFS-RSVEAGFDRGVDFGSKKESSVTARLVIQ 354
S AQ A++ VF + EA D +V RL+ +
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSD-----------TVVCRLLTE 157
Query: 355 SNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDAL 412
S+ G +IGKGG +V +RK TG I + N P C +D++V++ G + V+ AL
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 162/260 (62%), Gaps = 10/260 (3%)
Query: 176 PFDRTKTTA-SRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNS 234
PF+ A P+E F + P ET T + + R Q + L S + + + +
Sbjct: 371 PFEMVPRDAMGMPFESFPRDAYGRPIETMTQETL--RGQSADYLAHRYSTLDTHPHSFTT 428
Query: 235 LSAEVNRVSALDP----RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA 290
++ N + P ++V F+ILCS + G VIG GG +R L +ETGA I++
Sbjct: 429 SASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVG 488
Query: 291 PPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTAR 350
+ +CE+RLI +TA ENPE + SPAQKA++L+FSR E ++ +D G + SS+TAR
Sbjct: 489 NTLDDCEERLIAVTASENPECQ-SSPAQKAIMLIFSRLFELATNKILDNGPR--SSITAR 545
Query: 351 LVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQD 410
LV+ ++Q+GC++GKGG IVSEMRK TG I+++ Q PKC ++NDQ+VQI+G+F NV++
Sbjct: 546 LVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVRE 605
Query: 411 ALYNATGRLRDNLFVSTQNN 430
A+++ T RLRD++F ++ N
Sbjct: 606 AIFHITSRLRDSVFSNSMKN 625
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 99/215 (46%), Gaps = 36/215 (16%)
Query: 16 QVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGGE- 74
FRLLC S VG++IGK+G VIK LQQ+T A+IR+++ P SPDRVI II++ D
Sbjct: 46 HAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSR 105
Query: 75 ---------------------------ALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSD 107
AL++VFE +AAEAD D VV CRLL++
Sbjct: 106 VKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFEL---LAAEADS----DTVV-CRLLTE 157
Query: 108 PAQXXXXXXXXXXXXXXIRAETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXX 167
+ IR ETGCKI + + LP DE++E++G
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 168 XXRIEECLPFDRTKTTASRPYEGFQHGTFDVPTET 202
++ C D+ + +RP E + P ET
Sbjct: 218 SRCLQNCQSIDKVRMVGNRPLEKEFQASLHRPIET 252
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 33/178 (18%)
Query: 256 FRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYP- 314
FR+LC VGAVIGK G+ I+ LQ TGA I + P DR+ITI A + +SR
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 315 -------------------SPAQKAVVLVFS-RSVEAGFDRGVDFGSKKESSVTARLVIQ 354
S AQ A++ VF + EA D +V RL+ +
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSD-----------TVVCRLLTE 157
Query: 355 SNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDAL 412
S+ G +IGKGG +V +RK TG I + N P C +D++V++ G + V+ AL
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADTDDEMVEVEGNAIAVKKAL 214
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 129/302 (42%), Gaps = 51/302 (16%)
Query: 254 VTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA-----PPVVECEDRLITITALEN 308
+T R++ ++G V+GKGG + ++ TGA I I P + D+++ IT E
Sbjct: 542 ITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITG-EF 600
Query: 309 PESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSV--TARLVIQSNQVGCLIGKGG 366
P R +A+ + SR ++ F + K SS T R + + IG
Sbjct: 601 PNVR------EAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSIGSHQ 654
Query: 367 AIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQ--FLNVQDALYNATGRLRDNLF 424
++ + ++ R + + F + + + G ++ +D + R N
Sbjct: 655 SVSNPATNSSSLHRR--SEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFPD-----RFNPS 707
Query: 425 VSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNH----PSSPWSWTPKSAGAINSRGSN 480
+N G MDH S NS+H PS W+ P +A RG +
Sbjct: 708 AGYSHNFGRRFT-----------MDH---SDNSHHLTEAPSRLWASPPPAA----PRGLS 749
Query: 481 DVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQ 540
D GL+ L SG K+AIV TNTTVEI V + + VYGE G NL++L+Q
Sbjct: 750 DASGGLSSARAGHVLGSGHKSAIV------TNTTVEIRVPANAMSFVYGEQGYNLEQLRQ 803
Query: 541 IS 542
+S
Sbjct: 804 VS 805
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 162/260 (62%), Gaps = 10/260 (3%)
Query: 176 PFDRTKTTA-SRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNS 234
PF+ A P+E F + P ET T + + R Q + L S + + + +
Sbjct: 371 PFEMVPRDAMGMPFESFPRDAYGRPIETMTQETL--RGQSADYLAHRYSTLDTHPHSFTT 428
Query: 235 LSAEVNRVSALDP----RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA 290
++ N + P ++V F+ILCS + G VIG GG +R L +ETGA I++
Sbjct: 429 SASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVG 488
Query: 291 PPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTAR 350
+ +CE+RLI +TA ENPE + SPAQKA++L+FSR E ++ +D G + SS+TAR
Sbjct: 489 NTLDDCEERLIAVTASENPECQS-SPAQKAIMLIFSRLFELATNKILDNGPR--SSITAR 545
Query: 351 LVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQD 410
LV+ ++Q+GC++GKGG IVSEMRK TG I+++ Q PKC ++NDQ+VQI+G+F NV++
Sbjct: 546 LVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVRE 605
Query: 411 ALYNATGRLRDNLFVSTQNN 430
A+++ T RLRD++F ++ N
Sbjct: 606 AIFHITSRLRDSVFSNSMKN 625
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/343 (32%), Positives = 162/343 (47%), Gaps = 51/343 (14%)
Query: 254 VTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA-----PPVVECEDRLITITALEN 308
+T R++ ++G V+GKGG + ++ TGA I I P + D+++ IT E
Sbjct: 542 ITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITG-EF 600
Query: 309 PESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSV--TARLVIQSNQVGCLIGKGG 366
P R +A+ + SR ++ F + K SS T R + + IG
Sbjct: 601 PNVR------EAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSIGSHQ 654
Query: 367 AIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQ--FLNVQDALYNATGRLRDNLF 424
++ + ++ R + + F + + + G ++ +D + R N
Sbjct: 655 SVSNPATNSSSLHRR--SEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFPD-----RFNPS 707
Query: 425 VSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNH----PSSPWSWTPKSAGAINSRGSN 480
+N G MDH S NS+H PS W+ P +A RG +
Sbjct: 708 AGYSHNFGRRFT-----------MDH---SDNSHHLTEAPSRLWASPPPAA----PRGLS 749
Query: 481 DVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQ 540
D GL+ L SG K+AIV TNTTVEI V + + VYGE G NL++L+Q
Sbjct: 750 DASGGLSSARAGHVLGSGHKSAIV------TNTTVEIRVPANAMSFVYGEQGYNLEQLRQ 803
Query: 541 ISGAKVTVHEPLPGASTRAIVISGTPDETQAAQSLLQAFILNG 583
ISGA+V +HEP G S R IVISGTPD+TQAAQ+LL AFIL G
Sbjct: 804 ISGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 846
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 99/215 (46%), Gaps = 36/215 (16%)
Query: 16 QVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGGE- 74
FRLLC S VG++IGK+G VIK LQQ+T A+IR+++ P SPDRVI II++ D
Sbjct: 46 HAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSR 105
Query: 75 ---------------------------ALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSD 107
AL++VFE +AAEAD D VV CRLL++
Sbjct: 106 VKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFEL---LAAEADS----DTVV-CRLLTE 157
Query: 108 PAQXXXXXXXXXXXXXXIRAETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXXXXXXXX 167
+ IR ETGCKI + + LP DE++E++G
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 168 XXRIEECLPFDRTKTTASRPYEGFQHGTFDVPTET 202
++ C D+ + +RP E + P ET
Sbjct: 218 SRCLQNCQSIDKVRMVGNRPLEKEFQASLHRPIET 252
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 33/178 (18%)
Query: 256 FRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYP- 314
FR+LC VGAVIGK G+ I+ LQ TGA I + P DR+ITI A + +SR
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 315 -------------------SPAQKAVVLVFS-RSVEAGFDRGVDFGSKKESSVTARLVIQ 354
S AQ A++ VF + EA D +V RL+ +
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSD-----------TVVCRLLTE 157
Query: 355 SNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDAL 412
S+ G +IGKGG +V +RK TG I + N P C +D++V++ G + V+ AL
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 164/621 (26%), Positives = 272/621 (43%), Gaps = 99/621 (15%)
Query: 18 TFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVI------------R 65
T+R+LCH ++ G +IGK+G +IKS++Q T A I + + P +R+I R
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 66 IISKLDGGEALLRVFEKVLDVAAE--------ADEFDVLDRVVC-----CRLLSDPAQXX 112
+ S EAL V +++L+ A+ +E D RL+
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 113 XXXXXXXXXXXXIRAETGCKIRVF--SDKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXR 170
+R ET IR+ LP S+EI++I G R
Sbjct: 189 CLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSR 248
Query: 171 IEECLPFDRTKTTASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAY 230
+ E DR+ ++G H D R+Q S P + R N N
Sbjct: 249 LRESQHRDRSN------FQGRSHSPERSFAAAGDDYMPQLRRQSSDRFPRGNFR-NNNFS 301
Query: 231 GVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA 290
S AE + +E+ F+ILC D++ V+G+ I LQNE G ++ ++
Sbjct: 302 SRQSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVS 361
Query: 291 PPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTAR 350
PV ++++ITI++ E P+ + PAQ+A++ + ++ +D K++ +T R
Sbjct: 362 DPVAGSDEQIITISSEEAPDDPF-FPAQEALLHIQTQI--------IDLIPDKDNLITTR 412
Query: 351 LVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQD 410
L++ S CL GK G+ VSE+ + TGT ++++A + P+C + ND ++QI+G+ ++
Sbjct: 413 LLVPSRDSICLEGKAGS-VSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAARE 471
Query: 411 ALYNATGRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWTPKS 470
AL T LR ++F LSQ P+S + P
Sbjct: 472 ALVELTLLLRSHMF--------------------------KELSQKETPPASTSTTGPLE 505
Query: 471 --AGAINSRGSNDV---GRGLTPQNGDLELVS----------GSKT------------AI 503
AG + SN+ G T N +L+ VS GS
Sbjct: 506 GVAGVMEVASSNNTIQSREGPTSSNLNLQQVSTILPQFKEGFGSVAKAGESEHREEVPVT 565
Query: 504 VSKTAI--VTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIV 561
S+ A+ VT +T+E+++ ++ + + L ++ + SGA VT+ E P + I
Sbjct: 566 TSRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIR 625
Query: 562 ISGTPDETQAAQSLLQAFILN 582
ISGTP++ + AQSLLQ FIL+
Sbjct: 626 ISGTPEQAERAQSLLQGFILS 646
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 172/628 (27%), Positives = 273/628 (43%), Gaps = 90/628 (14%)
Query: 17 VTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRII--------- 67
V +R+LC + +GS+IGK+G VI ++Q T ARI++ D P +RVI I
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 68 -----SKLD-------GGEALLRVFEKVLDVAAEADEFDVLDR--VVCCRLLSDPAQXXX 113
S+LD ALL+V + ++ A A E +DR CRLL +Q
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 114 XXXXXXXXXXXIRAETGCKIRVFSDKL--PAGT--KPSDEIIEIQGXXXXXXXXXXXXXX 169
IR T ++V S + P+ T D I+ I G
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 170 RI-----EECLPFDRT--KTTAS---------RPYEGFQHGTFDVPTETCTDKHIDHRQQ 213
+ E +P D T + AS P G P++ +H +
Sbjct: 224 IMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLY------PSQDSIFQHGANVSS 277
Query: 214 KSSTLPDLSSRYNGNAYGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIGKGG 273
TLP N V S SA + V + +++ +++CS+ ++G VIGKGG
Sbjct: 278 FIGTLPQGYGENAANPVPVFSASA-LPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGG 336
Query: 274 STIRALQNETGANISIAPPVVECEDR-LITITALENPESRYPSPAQKAVVLVFSRSVEAG 332
TI+ ++ +G++I + +D +IT+TA E+P+ S A +AV+L+ +
Sbjct: 337 LTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDD-LKSMAVEAVLLLQEK----- 390
Query: 333 FDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCT 392
+ E V +L++ S +GC+IGK G+I+SE+RK T I + N PKC
Sbjct: 391 ------INDEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCA 444
Query: 393 TDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQN---NGGXXXXXXXXXXXXXXXMD 449
ND+LV+ISG+ NV+DAL RLRD++ + N
Sbjct: 445 DPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQPPARSENNNFFSSSSSNT 504
Query: 450 HLSLSQNSNHPSSPWSWTPKSAGA-INSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKT- 507
L+L P S S P+ A N R + P +G + G + V T
Sbjct: 505 GLAL------PQSFMSSVPQVASVDFNRRPETGSSMSMLPSSGG---IYGYGSFPVGNTS 555
Query: 508 -------------AIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPG 554
+ +TT+E+ + + + V G GGNLD +++ISGA + + +
Sbjct: 556 YGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNS 615
Query: 555 ASTRAIVISGTPDETQAAQSLLQAFILN 582
R +ISGT ++ + A++L QAFI++
Sbjct: 616 HGGRVALISGTSEQKRTAENLFQAFIMS 643
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 128/320 (40%), Gaps = 50/320 (15%)
Query: 6 HFNGPSNGPTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIR 65
H G S+ ++ +++C +S++G +IGK G+ IK ++QA+ + I ++D+ + D +
Sbjct: 306 HGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVI 365
Query: 66 IIS--------KLDGGEALLRVFEKVLDVAAEADEFDVL--DRVVCCRLLSDPAQXXXXX 115
++ K EA+L + EK+ D + + +L +V+ C +
Sbjct: 366 TVTATESPDDLKSMAVEAVLLLQEKINDEDEDKVKMQLLVSSKVIGCII----------- 414
Query: 116 XXXXXXXXXIRAETGCKIRVFS-DKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEEC 174
IR T I + + P P+DE++EI G R+ +
Sbjct: 415 GKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDD 474
Query: 175 LPFDRTKTTASRP---------------YEGF---QHGTFDVPTETCTDKHIDHRQQKSS 216
+ DR + ++P G Q VP D + R + S
Sbjct: 475 VLRDRETGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVD--FNRRPETGS 532
Query: 217 TLPDLSSRYNGNAYGV------NSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIG 270
++ L S +G YG N+ + S+ L + T + + VG V+G
Sbjct: 533 SMSMLPS--SGGIYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMG 590
Query: 271 KGGSTIRALQNETGANISIA 290
+GG + ++ +GA I I+
Sbjct: 591 RGGGNLDNIRRISGAMIEIS 610
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 212/460 (46%), Gaps = 70/460 (15%)
Query: 17 VTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAP-PDSPDRVIRI------ISK 69
VTFR+LC+ S+ G +IGK G ++K L ++T + I ++ P DSP R+I+I +S+
Sbjct: 30 VTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSR 89
Query: 70 LDGG------------------------EALLRVFEKVLDVAAEADEFDVLDRVVCCRLL 105
+ G AL+RVFE + + D V C LL
Sbjct: 90 VKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEAL-------NFGDCTSSTVSCNLL 142
Query: 106 SDPAQXXXXXXXXXXXXXXIRAETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXXXXXX 165
+ + I ETGC +++ S L T P D +++I+G
Sbjct: 143 MEGSHVVTVIGKNGELMQRILEETGCNVQLRSHDLSICTNPGDVVLKIEGNRLSAVMKAL 202
Query: 166 XX-XXRIEECLPFDRTKTTAS-------RPYEGFQHGTFDVPTETCTDKHIDHRQQKSST 217
R++ C P A RP E +V +H++ Q+ +
Sbjct: 203 VSISSRLQACPPISTASLHAEAVPDALRRPMEYRSQQYREVDPHGSLHRHVEISQEDALV 262
Query: 218 LPDLSS-------RYNGNAYGVNSLSAEVNRVSALDPRALQ------KEVTFRILCSNDR 264
P + +Y +++ + LQ ++V +ILCSN+
Sbjct: 263 RPFFRTITQPRIDYLPHPSYDHRLITSASKNPPVTIKQPLQASKDDIRQVDLKILCSNES 322
Query: 265 VGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLV 324
VI ++ T A+IS+ +C++RL+TITA E + S +Q+A+VLV
Sbjct: 323 ASVVIKT--------RSVTDASISVGDRHPDCDERLVTITAFEKTKD-ITSESQRALVLV 373
Query: 325 FSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIA 384
FS E + +D G SS+TARLV++SNQ+ CL+G+ G I + +++ TG I V+
Sbjct: 374 FSNMYENATAKVLDSGLT--SSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLN 431
Query: 385 NNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLF 424
Q PKC ++N+Q+VQISG+F NV++A+ T LR++L
Sbjct: 432 VEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLREDLI 471
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 203/423 (47%), Gaps = 44/423 (10%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD------- 71
FR LC ++GS+IG+ G ++K L+ T ++IRI +A P +RVI I S D
Sbjct: 52 FRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGD 111
Query: 72 -------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
+AL R+ ++V+ A +++ ++ V +LL Q
Sbjct: 112 GEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQN 171
Query: 125 IRAETGCKIRVFSDK-LPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTT 183
IR+ETG +IR+ D+ +P SDE+I+I G R+ E + +
Sbjct: 172 IRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLS 231
Query: 184 ASRPYEGFQHGTFDVPTETCTDKHIDHRQ-QKSSTLPDLSSRYNGNAYGVNSLSAEVNRV 242
+S G+ G+ + H + L L Y +A S + +
Sbjct: 232 SS---GGYPAGSL-----------MSHAGGPRLVGLAPLMGSYGRDA---GDWSRPLYQP 274
Query: 243 SALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLIT 302
DP A E R++ + + +VIGKGG+ I L+ ET A I + E D LIT
Sbjct: 275 PRNDPPA--TEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLIT 332
Query: 303 ITALENPESRYPSPAQKAVVLVFSR-SVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCL 361
I+A E E Y SP +AV+ + + S + D G+ S T RL++ S+++GC+
Sbjct: 333 ISAREVFEDAY-SPTIEAVMRLQPKCSDKVERDSGL-------VSFTTRLLVPSSRIGCI 384
Query: 362 IGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRD 421
+GKGGAI++EMR+ T IR++ PK +D+D++VQISG+ ++AL T RLR
Sbjct: 385 LGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRA 444
Query: 422 NLF 424
N+F
Sbjct: 445 NVF 447
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 104/178 (58%), Gaps = 8/178 (4%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
+ + FR LC ++G+VIG+GG ++ L+N+T + I I + C++R+ITI + +
Sbjct: 47 RDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDET 106
Query: 311 SRYP------SPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
+ + SPAQ A+ + R V D + + E VTA+L++ S+Q+GC++G+
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVVAD--DARSEDSPEGEKQVTAKLLVPSDQIGCILGR 164
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDN 422
GG IV +R TG IR++ + P C ++D+L+QISG+ L V+ AL RL +N
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 203/423 (47%), Gaps = 44/423 (10%)
Query: 19 FRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD------- 71
FR LC ++GS+IG+ G ++K L+ T ++IRI +A P +RVI I S D
Sbjct: 52 FRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGD 111
Query: 72 -------GGEALLRVFEKVLDVAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXXXX 124
+AL R+ ++V+ A +++ ++ V +LL Q
Sbjct: 112 GEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQN 171
Query: 125 IRAETGCKIRVFSDK-LPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRIEECLPFDRTKTT 183
IR+ETG +IR+ D+ +P SDE+I+I G R+ E + +
Sbjct: 172 IRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLS 231
Query: 184 ASRPYEGFQHGTFDVPTETCTDKHIDHRQ-QKSSTLPDLSSRYNGNAYGVNSLSAEVNRV 242
+S G+ G+ + H + L L Y +A S + +
Sbjct: 232 SS---GGYPAGSL-----------MSHAGGPRLVGLAPLMGSYGRDA---GDWSRPLYQP 274
Query: 243 SALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLIT 302
DP A E R++ + + +VIGKGG+ I L+ ET A I + E D LIT
Sbjct: 275 PRNDPPA--TEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLIT 332
Query: 303 ITALENPESRYPSPAQKAVVLVFSR-SVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCL 361
I+A E E Y SP +AV+ + + S + D G+ S T RL++ S+++GC+
Sbjct: 333 ISAREVFEDAY-SPTIEAVMRLQPKCSDKVERDSGL-------VSFTTRLLVPSSRIGCI 384
Query: 362 IGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRD 421
+GKGGAI++EMR+ T IR++ PK +D+D++VQISG+ ++AL T RLR
Sbjct: 385 LGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRA 444
Query: 422 NLF 424
N+F
Sbjct: 445 NVF 447
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 104/178 (58%), Gaps = 8/178 (4%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPE 310
+ + FR LC ++G+VIG+GG ++ L+N+T + I I + C++R+ITI + +
Sbjct: 47 RDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDET 106
Query: 311 SRYP------SPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGK 364
+ + SPAQ A+ + R V D + + E VTA+L++ S+Q+GC++G+
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVVAD--DARSEDSPEGEKQVTAKLLVPSDQIGCILGR 164
Query: 365 GGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDN 422
GG IV +R TG IR++ + P C ++D+L+QISG+ L V+ AL RL +N
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 206/444 (46%), Gaps = 55/444 (12%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIIS----- 68
P + R++CHAS +G +IG G V+ L++ T +I + S V+ I+
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVN 81
Query: 69 ----------KLDGGE--------------ALLRVFEKVLDVAAEADEFDVLD---RVVC 101
+ GGE AL+RV E+ V A D V+D
Sbjct: 82 QSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAY 141
Query: 102 CRLLSDPAQXXXXXXXXXXXXXXIRAETGCKIRVFSDKLPAGTKPSDEIIEIQGXXXXXX 161
C +L+D Q +R +G IRV + GTK +DE+I+I G
Sbjct: 142 CGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPI-CGTK-NDELIQITGDVLAVK 199
Query: 162 XXXXXXXXRIEECLPFDRTKTTASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDL 221
I+ P + S +G++ + D +E D H S P+L
Sbjct: 200 KALVMVSSYIQNNAPLNGYPPPLS--IKGYESLSTDGNSE---DPH-------SEFFPNL 247
Query: 222 SSRYNGNAYGVNSLSAEVNRVSALDP-RALQKEVTFRILCSNDRVGAVIGKGGSTIRALQ 280
S NA + NR D + +++V F+I+ ++ G +IGK G+ IRALQ
Sbjct: 248 RSSSLSNATEI----VASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQ 303
Query: 281 NETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDRGVDFG 340
NETGA+IS+ P+ +R++T++A EN ESRY S AQ A+ LVF+RSVE ++G+ G
Sbjct: 304 NETGASISVGAPLKVSGERVVTVSARENLESRY-SHAQNALALVFARSVEIDVEKGLRPG 362
Query: 341 SKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQ 400
+ V +L++ S+ G G E ATG + + NQ + ++N+ +++
Sbjct: 363 LHNGAIVKTKLLVPSHFANSFNGNGN---REAIIATGADVHISVGNQVLEWISENEVVIE 419
Query: 401 ISGQFLNVQDALYNATGRLRDNLF 424
I G++ +VQ AL + + +LR+NL
Sbjct: 420 IKGEYSHVQKALTHVSSKLRENLL 443
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 505 SKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVISG 564
SK V T+E+ V D + S+YG DG +D L+QISGA V V +P +T ++ISG
Sbjct: 556 SKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTGTEAT--VLISG 613
Query: 565 TPDETQAAQSLLQAFI 580
P++ + A SL+++ +
Sbjct: 614 NPEQARTAMSLIESIL 629
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 139/614 (22%), Positives = 250/614 (40%), Gaps = 92/614 (14%)
Query: 17 VTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD----- 71
V +R+LC VG +IGK+G VI +++ T A+I++ D RVI I +
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 72 -------------GGEALLRVFEKVLDVAAEADEFDVLDR--VVCCRLLSDPAQXXXXXX 116
+ALL+V++ ++ E + +DR CRLL +Q
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIG 155
Query: 117 XXXXXXXXIRAETGCKIRVFS----DKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRI- 171
IR T ++V S D D ++ I G +
Sbjct: 156 KAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMY 215
Query: 172 ----EECLPFDRTKTTASRPYEGFQHGTFDVPT--------ETCTDKHIDHRQQKSSTLP 219
E +P D T + + VP+ +T + DH Q+ + +P
Sbjct: 216 KINPRENIPLDSTS-------QDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGAGVP 268
Query: 220 ---------DLSSRYNGNAYGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIG 270
D A V ++ + + +E+ F++LC + VIG
Sbjct: 269 SYFNALSVSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIG 328
Query: 271 KGGSTIRALQNETGANISIAPPVVECEDR--LITITALENPESRYPSPAQKAVVLVFSRS 328
KGGSTI+ ++ +G+ I + +C D +I +TA E+P+ S A +AV+L+
Sbjct: 329 KGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDD-MKSMAVEAVLLLQEY- 386
Query: 329 VEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQF 388
+ +V +L++ S +GC+IGK G++++E+RK T I + +
Sbjct: 387 ----------INDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKK- 435
Query: 389 PKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNNGGXXXXXXXXXXXXXXXM 448
D LV++SG+ +V+DAL RLR+++ G
Sbjct: 436 -------DDLVEVSGEVSSVRDALIQIVLRLREDVL------GDKDSVATRKPPARTDNC 482
Query: 449 DHLSLSQNSNHPSSPWSWTPKSAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTA 508
LS S N+ + + + S + GS G + G S
Sbjct: 483 SFLSGSSNAGYTLPSFMSSMASTSGFHGYGSFPAGDNVLGSTGPY-----------SYGR 531
Query: 509 IVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAIVISGTPDE 568
+ +++ +EI++ + V G+ GGNL+ +++ISGA + + ++SGT ++
Sbjct: 532 LPSSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQ 591
Query: 569 TQAAQSLLQAFILN 582
+ A++L+QAF+++
Sbjct: 592 MRCAENLVQAFVMS 605
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 25/343 (7%)
Query: 256 FRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPS 315
FR++ +VGA+IG+ G I+ + ET A I + V DR++ I+ E PE+ Y S
Sbjct: 76 FRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEA-YMS 134
Query: 316 PAQKAVVLVFSRSVEAGFDRGVDFGSKKESSV--TARLVIQSNQVGCLIGKGGAIVSEMR 373
PA AV+ VF R +G D + SV + RL++ S Q LIGK G+++ +
Sbjct: 135 PAMDAVLRVFRRV--SGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIV 192
Query: 374 KATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLFVSTQNNGGX 433
+ +G +R+++ + P ++++V + G+ L + AL G LR F+
Sbjct: 193 ENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRR--FLVDHTVVPL 250
Query: 434 XXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWTPKSA-------------GAINSRGSN 480
+ L+ S++S H S P + ++SR
Sbjct: 251 FEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARREPLFLERDSRVDSR-VQ 309
Query: 481 DVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQ 540
G + Q+ L A VS +A VT + + + + + G +G N+ +++
Sbjct: 310 PSGVSIYSQDPVLSARHSPGLARVS-SAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRR 368
Query: 541 ISGAKVTVHE-PLPGASTRAIVISGTPDETQAAQSLLQAFILN 582
SGA +T+ E P P T + I GT + Q A+ L+Q FI+N
Sbjct: 369 RSGATITIKESPHPDQIT--VEIKGTTSQVQTAEQLIQEFIIN 409
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD-- 71
P FR++ ++VG++IG+ G IK + + T ARI++ D P ++PDR++ I K +
Sbjct: 71 PGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPE 130
Query: 72 -----GGEALLRVFEKVLDVAAEADEFDVLDR---VVCCRLLSDPAQXXXXXXXXXXXXX 123
+A+LRVF +V + + D+ DV + RLL Q
Sbjct: 131 AYMSPAMDAVLRVFRRVSGL-PDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIK 189
Query: 124 XIRAETGCKIRVFS-DKLPAGTKPSDEIIEIQG 155
I +G +R+ S ++ P + I+++QG
Sbjct: 190 SIVENSGASVRILSEEETPFYAAQDERIVDLQG 222
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/462 (23%), Positives = 184/462 (39%), Gaps = 87/462 (18%)
Query: 17 VTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLD----- 71
V +R+LC VG +IGK+G VI +++ T A+I++ D RVI I +
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 72 -------------GGEALLRVFEKVLDVAAEADEFDVLDR--VVCCRLLSDPAQXXXXXX 116
+ALL+V++ ++ E + +DR CRLL +Q
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIG 155
Query: 117 XXXXXXXXIRAETGCKIRVFS----DKLPAGTKPSDEIIEIQGXXXXXXXXXXXXXXRI- 171
IR T ++V S D D ++ I G +
Sbjct: 156 KAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMY 215
Query: 172 ----EECLPFDRTK--------------TTASRPYEGFQHGTFDVPTETCTDKHIDHRQQ 213
E +P D T + + P GF DH Q
Sbjct: 216 KINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQ-------------DHILQ 262
Query: 214 KSSTLP---------DLSSRYNGNAYGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDR 264
+ + +P D A V ++ + + +E+ F++LC
Sbjct: 263 QGAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCN 322
Query: 265 VGAVIGKGGSTIRALQNETGANISIAPPVVECEDR--LITITALENPESRYPSPAQKAVV 322
+ VIGKGGSTI+ ++ +G+ I + +C D +I +TA E+P+ S A +AV+
Sbjct: 323 IMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDD-MKSMAVEAVL 381
Query: 323 LVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRV 382
L+ + +V +L++ S +GC+IGK G++++E+RK T I +
Sbjct: 382 LLQEY-----------INDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICI 430
Query: 383 IANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNLF 424
+ D LV++SG+ +V+DAL RLR+++
Sbjct: 431 SKGKK--------DDLVEVSGEVSSVRDALIQIVLRLREDVL 464
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 252 KEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPES 311
++ +R LC + G++IGKGG + +++ET +N+ I + CE+R++T+ + +
Sbjct: 17 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 76
Query: 312 RY------PSPAQKAVVLVFSRSV-----EAGFDRGVDFGSKKESSVTARLVIQSNQVGC 360
+ PA A+ V V + G D D G K+ +VT R+++ S+Q+GC
Sbjct: 77 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQ--TVTVRMLVPSDQIGC 134
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKC--TTDNDQLVQISGQFLNVQDALYNATGR 418
+IGKGG ++ +R T IRVI + P C T +D+L+ I G+ L V++ALY
Sbjct: 135 VIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASL 193
Query: 419 LRDN 422
L DN
Sbjct: 194 LHDN 197
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 276 IRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDR 335
I ++ ETGA I + + +D +I I++ E E + SPA A + + R E
Sbjct: 266 INQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ--SPAVNAAIRLQQRCSEKVGKD 323
Query: 336 GVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDN 395
D +++ RL++ S+Q+GCLIGKGGA++SEMR T IR++ PK ++
Sbjct: 324 ANDL------AISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIARED 377
Query: 396 DQLVQISGQFLNVQDALYNATGRLRDNLF 424
+++VQI+G AL RLR N F
Sbjct: 378 EEMVQITGSPDAAMKALTQVILRLRANSF 406
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 252 KEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPES 311
++ +R LC + G++IGKGG + +++ET +N+ I + CE+R++T+ + +
Sbjct: 42 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 101
Query: 312 RY------PSPAQKAVVLVFSRSV-----EAGFDRGVDFGSKKESSVTARLVIQSNQVGC 360
+ PA A+ V V + G D D G K+ +VT R+++ S+Q+GC
Sbjct: 102 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQ--TVTVRMLVPSDQIGC 159
Query: 361 LIGKGGAIVSEMRKATGTMIRVIANNQFPKC--TTDNDQLVQISGQFLNVQDALYNATGR 418
+IGKGG ++ +R T IRVI + P C T +D+L+ I G+ L V++ALY
Sbjct: 160 VIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASL 218
Query: 419 LRDN 422
L DN
Sbjct: 219 LHDN 222
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 276 IRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDR 335
I ++ ETGA I + + +D +I I++ E E + SPA A + + R E
Sbjct: 291 INQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ--SPAVNAAIRLQQRCSEKVGKD 348
Query: 336 GVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDN 395
D +++ RL++ S+Q+GCLIGKGGA++SEMR T IR++ PK ++
Sbjct: 349 ANDL------AISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIARED 402
Query: 396 DQLVQISGQFLNVQDALYNATGRLRDNLF 424
+++VQI+G AL RLR N F
Sbjct: 403 EEMVQITGSPDAAMKALTQVILRLRANSF 431
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 253 EVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESR 312
+ +R LC + G++IGKGG + +++ET +N+ I + CE+R++T+ + +
Sbjct: 10 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 69
Query: 313 Y------PSPAQKAVVLVFSRSV-----EAGFDRGVDFGSKKESSVTARLVIQSNQVGCL 361
+ PA A+ V V + G D D G K+ +VT R+++ S+Q+GC+
Sbjct: 70 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQ--TVTVRMLVPSDQIGCV 127
Query: 362 IGKGGAIVSEMRKATGTMIRVIANNQFPKC--TTDNDQLVQISGQFLNVQDALYNATGRL 419
IGKGG ++ +R T IRVI + P C T +D+L+ I G+ L V++ALY L
Sbjct: 128 IGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 186
Query: 420 RDN 422
DN
Sbjct: 187 HDN 189
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 276 IRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRSVEAGFDR 335
I ++ ETGA I + + +D +I I++ E E + SPA A + + R E
Sbjct: 258 INQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ--SPAVNAAIRLQQRCSEKVGKD 315
Query: 336 GVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDN 395
D +++ RL++ S+Q+GCLIGKGGA++SEMR T IR++ PK ++
Sbjct: 316 ANDL------AISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIARED 369
Query: 396 DQLVQISGQFLNVQDALYNATGRLRDNLF 424
+++VQI+G AL RLR N F
Sbjct: 370 EEMVQITGSPDAAMKALTQVILRLRANSF 398
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 149/368 (40%), Gaps = 68/368 (18%)
Query: 253 EVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISI--APPVVECEDRLITITALENPE 310
E FR+L +VG++IG+ G I+ + ET A I I PP +R + ++ E PE
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPG--TTERAVMVSGKEEPE 243
Query: 311 SRYPSPAQKAVVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVS 370
S P P+ ++ V R V+ G D G + S V+ RL++ ++Q G LIGK G V
Sbjct: 244 SSLP-PSMDGLLRVHMRIVD-GLD-GEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVK 300
Query: 371 EMRKATGTMIRVIANNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRDNL------- 423
+++A+ ++RV+ + P +D++V++ G+ +V AL LR L
Sbjct: 301 AIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIP 360
Query: 424 FVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSSPWSWTPKSAGAINSRGSNDVG 483
F Q MDH+ P SW P G S G G
Sbjct: 361 FFENQ------------MQKPTRQMDHM--------PPPHQSWGPPQ-GHAPSVGGGGYG 399
Query: 484 RGLT---------------PQNGDLELVSGSKTAI--------------VSKTAIVTNTT 514
P+ + I + + T
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPMVAQQVT 459
Query: 515 VEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEP--LPGASTRAIVISGTPDETQAA 572
++ + D+V G G N+ +++SGA VT+ E +PG T + +SGT + Q A
Sbjct: 460 QQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMT--VEVSGTGSQVQTA 517
Query: 573 QSLLQAFI 580
L+Q F+
Sbjct: 518 VQLIQNFM 525
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 16/154 (10%)
Query: 14 PTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISK---- 69
P + FR+L A +VGS+IG+ G VIK + + T ARI+I D PP + +R + + K
Sbjct: 184 PGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPE 243
Query: 70 ------LDGGEALLRVFEKVLD-VAAEADEFDVLDRVVCCRLLSDPAQXXXXXXXXXXXX 122
+DG LLRV +++D + EA + + V RLL +Q
Sbjct: 244 SSLPPSMDG---LLRVHMRIVDGLDGEASQAPPPSK-VSTRLLVPASQAGSLIGKQGGTV 299
Query: 123 XXIRAETGCKIRVF-SDKLPAGTKPSDEIIEIQG 155
I+ + C +RV S+ LP D ++E+ G
Sbjct: 300 KAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333
>AT5G53060.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21520310 FORWARD LENGTH=198
Length = 198
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 254 VTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITIT--ALENPES 311
T+RILC + + G VIGK G+ I++++ TGA I++ V +R+I I+ +P+
Sbjct: 68 TTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDG 127
Query: 312 RYP--SPAQKAVVLVFSRSV--EAGFDRGVDFGSKKE---------SSVTARLVIQSNQV 358
R P SPAQ+A+ V R + EA F G ++E V RLV+ V
Sbjct: 128 RMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHV 187
Query: 359 GCLI 362
GCL+
Sbjct: 188 GCLL 191
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 17 VTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVI------------ 64
T+R+LCH ++ G +IGK+G +IKS++Q T A I + + P +R+I
Sbjct: 68 TTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDG 127
Query: 65 RIISKLDGGEALLRVFEKVLDVAAE 89
R+ S EAL V +++L+ A+
Sbjct: 128 RMPSFSPAQEALFSVHDRILESEAQ 152
>AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=334
Length = 334
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 148/351 (42%), Gaps = 84/351 (23%)
Query: 251 QKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIA---PPVVECEDRLITITALE 307
+K R L SN G+VIGKGGSTI Q ++GA I ++ DR+I I
Sbjct: 32 EKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMI---- 87
Query: 308 NPESRYPSPAQKAVVLVFSRSVEAGFDR-----GVDFGSKKESSVTARLVIQSNQVGCLI 362
S + K VV +E D+ + G++ E RLV+ ++ G +I
Sbjct: 88 -------SGSIKEVV----NGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGII 136
Query: 363 GKGGAIVSEMRKATGTMIRVIA-NNQFPKCTTDNDQLVQISGQFLNVQDALYNATGRLRD 421
GKGGA + + + I++ +N F + D+LV +SG F A+ +L +
Sbjct: 137 GKGGATIKSFIEESKAGIKISPLDNTFYGLS---DRLVTLSGTFEEQMRAIDLILAKLTE 193
Query: 422 NLFVSTQNNGGXXXXXXXXXXXXXXXMDHLSLSQNSNHPSS------------PWSWTPK 469
+ DH SQN + P S P+++
Sbjct: 194 D--------------------------DH--YSQNVHSPYSYAGLFYSGFHGPPYAYALP 225
Query: 470 SAGAINSRGSNDVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYG 529
S + + G N V P NG SG K + A +TTV I V+++ I V G
Sbjct: 226 S---VATAGYNSV--NYAP-NG-----SGGKYQNHKEEA---STTVTIGVADEHIGLVLG 271
Query: 530 EDGGNLDRLKQISGAKVTVHEP---LPGASTRAIVISGTPDETQAAQSLLQ 577
G N+ + Q++GA++ + + + G + R + I+G Q A+++++
Sbjct: 272 RGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIK 322
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 341 SKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKC--TTDNDQL 398
S+ ++ VT R+++ S+Q+G LIGKGG I+ +R T IRV N+ P C +D+L
Sbjct: 67 SEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALALSHDEL 125
Query: 399 VQISGQFLNVQDALYNATGRLRDN 422
+QI G V++ALY L +N
Sbjct: 126 LQIIGDPSAVREALYQVAFLLYNN 149
>AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=313
Length = 313
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 39/213 (18%)
Query: 226 NGNAYGVNSLSAEVNRVSALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGA 285
NG ++ L +E++ A D ++ R++ N G +IGKGG+TI++ E+ A
Sbjct: 96 NGLELILDKLHSELH---AEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKA 152
Query: 286 NISIAP---PVVECEDRLITITALENPESRYPSPAQKAVVLV---------FSRSVEAGF 333
I I+P DRL+T++ + R A+ L+ +S++V + +
Sbjct: 153 GIKISPLDNTFYGLSDRLVTLSGTFEEQMR-------AIDLILAKLTEDDHYSQNVHSPY 205
Query: 334 DRGVDFGS---------------KKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGT 378
+ S K+E+S T + + +G ++G+GG + E+ + TG
Sbjct: 206 SYAAGYNSVNYAPNGSGGKYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGA 265
Query: 379 MIRVIANNQFPKCTTDNDQLVQISGQFLNVQDA 411
I++ F TT D+ V I+G +Q A
Sbjct: 266 RIKISDRGDFMSGTT--DRKVSITGPQRAIQQA 296
>AT2G25970.1 | Symbols: | KH domain-containing protein |
chr2:11071844-11075604 REVERSE LENGTH=632
Length = 632
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 28/199 (14%)
Query: 226 NGNAY------GVNSLSAEVNRVSALDPRALQ------KEVTFRILCSNDRVGAVIGKGG 273
NG +Y G +S +E ++S P ++ + T +I N RVG +IGKGG
Sbjct: 94 NGASYDYGDNKGFSSYPSEGKQMSGTVPSSIPVSYGSFQGTTKKIDIPNMRVGVIIGKGG 153
Query: 274 STIRALQNETGANISI-----APPVVECEDRLITITALENPESRYPSPAQKAVVLVFSRS 328
TI+ LQ ++GA I + A P C R + +T + S+ A++ + V +
Sbjct: 154 ETIKYLQLQSGAKIQVTRDMDADP--NCATRTVDLTGTPDQISK----AEQLITDVLQEA 207
Query: 329 VEAGFDRGVDFGSKKESSVTAR----LVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIA 384
G ++ + I +N+VG +IGKGG + M+ TG I+VI
Sbjct: 208 EAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIP 267
Query: 385 NNQFPKCTTDNDQLVQISG 403
+ P ++ +QI G
Sbjct: 268 LH-LPPGDPTPERTLQIDG 285