Miyakogusa Predicted Gene

Lj4g3v0385840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0385840.1 Non Chatacterized Hit- tr|H9VI41|H9VI41_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=C,63.64,4e-17,coiled-coil,NULL; COPI_assoc,Golgi apparatus membrane
protein TVP15; seg,NULL,CUFF.47026.1
         (197 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33625.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   239   7e-64
AT4G33625.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   239   8e-64

>AT4G33625.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: cultured cell; CONTAINS
           InterPro DOMAIN/s: Golgi apparatus membrane protein
           TVP15 (InterPro:IPR013714); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:16153114-16154543 REVERSE LENGTH=199
          Length = 199

 Score =  239 bits (611), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 131/148 (88%)

Query: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89
           DPFLV C+CFS++TSL AILC+ VNVL+AVRSF+++ D+FDGIFRCYAVVIA FVVL ET
Sbjct: 28  DPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLFDGIFRCYAVVIACFVVLVET 87

Query: 90  EWSFIIKFSQVLEYWAARGMLQIFVGVMTRAFPDYTRAREWIILLQNIASYLLLACGFVY 149
           EW FI+KFS+VLEYWA RGMLQIFV VMTRAFPDY   ++ ++LLQNIASYLLLACG +Y
Sbjct: 88  EWGFILKFSKVLEYWAGRGMLQIFVAVMTRAFPDYMTQKKDLLLLQNIASYLLLACGVIY 147

Query: 150 LISGVLCIGFLKRARQKQAITTEQAAKD 177
           +ISGVLCIGFLKRARQ++ ++ EQA KD
Sbjct: 148 VISGVLCIGFLKRARQQKEVSREQAVKD 175


>AT4G33625.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane, vacuole; EXPRESSED IN: cultured cell;
           CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane
           protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to
           59 proteins in 18 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other
           Eukaryotes - 9 (source: NCBI BLink). |
           chr4:16153114-16154543 REVERSE LENGTH=200
          Length = 200

 Score =  239 bits (610), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 131/148 (88%)

Query: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89
           DPFLV C+CFS++TSL AILC+ VNVL+AVRSF+++ D+FDGIFRCYAVVIA FVVL ET
Sbjct: 28  DPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLFDGIFRCYAVVIACFVVLVET 87

Query: 90  EWSFIIKFSQVLEYWAARGMLQIFVGVMTRAFPDYTRAREWIILLQNIASYLLLACGFVY 149
           EW FI+KFS+VLEYWA RGMLQIFV VMTRAFPDY   ++ ++LLQNIASYLLLACG +Y
Sbjct: 88  EWGFILKFSKVLEYWAGRGMLQIFVAVMTRAFPDYMTQKKDLLLLQNIASYLLLACGVIY 147

Query: 150 LISGVLCIGFLKRARQKQAITTEQAAKD 177
           +ISGVLCIGFLKRARQ++ ++ EQA KD
Sbjct: 148 VISGVLCIGFLKRARQQKEVSREQAVKD 175