Miyakogusa Predicted Gene

Lj4g3v0385820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0385820.1 Non Chatacterized Hit- tr|K4AFG9|K4AFG9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si037626,44.83,3e-18,seg,NULL; DUF565,Uncharacterised protein
family Ycf20,CUFF.47025.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF56...   191   3e-49
AT3G56830.1 | Symbols:  | Protein of unknown function (DUF565) |...    94   6e-20
AT3G56830.3 | Symbols:  | Protein of unknown function (DUF565) |...    94   7e-20
AT3G56830.2 | Symbols:  | Protein of unknown function (DUF565) |...    94   7e-20

>AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF565)
           | chr1:24297669-24298374 REVERSE LENGTH=197
          Length = 197

 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 3/158 (1%)

Query: 54  SSHFPQSGFLGRKAVWKIAFALNTGG-VPGN-GEQQSLNDTSSSFGGTRLGRILSAGGRQ 111
           S  +P   F  R+   KIAFAL+TG  +PG+ GE Q +N   +  G TRLGRI  AGG+Q
Sbjct: 40  SFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQ 99

Query: 112 LLDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDXXXXXXXXXXIEGIGMLLYR 171
           LL K+NSARKN PMKIFLLLLGFYTANALATILGQTGDWD          IEGIGML+Y+
Sbjct: 100 LLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYK 159

Query: 172 KP-PTVRTGRLQSFLLMLNYWKAGICLGLFVDAFKLGS 208
           KP  ++ +G+LQSF++ +N+WKAG+CLGLFVDAFKLGS
Sbjct: 160 KPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197


>AT3G56830.1 | Symbols:  | Protein of unknown function (DUF565) |
           chr3:21042755-21043840 REVERSE LENGTH=230
          Length = 230

 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)

Query: 98  GTRLGRILSAGGRQLLDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDXXXXXX 157
           G RL + +     +LL K+   +K++P K+F LL+GFY+A A +T +GQTGDWD      
Sbjct: 81  GLRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGL 140

Query: 158 XXXXIEGIGMLLYRKPPTVRTGRLQSFLLMLNYWKAGICLGLFVDAFK 205
               +E IG L+YR    +   +++S + M NYWK G+ LGLF+D+FK
Sbjct: 141 AVLVVECIGALMYRASIPL-INKMRSTITMFNYWKTGLALGLFLDSFK 187


>AT3G56830.3 | Symbols:  | Protein of unknown function (DUF565) |
           chr3:21042781-21043840 REVERSE LENGTH=188
          Length = 188

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 98  GTRLGRILSAGGRQLLDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDXXXXXX 157
           G RL + +     +LL K+   +K++P K+F LL+GFY+A A +T +GQTGDWD      
Sbjct: 81  GLRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGL 140

Query: 158 XXXXIEGIGMLLYRKPPTVRTGRLQSFLLMLNYWKAGICLGLFVDAFKL 206
               +E IG L+YR    +   +++S + M NYWK G+ LGLF+D+FK 
Sbjct: 141 AVLVVECIGALMYRASIPL-INKMRSTITMFNYWKTGLALGLFLDSFKF 188


>AT3G56830.2 | Symbols:  | Protein of unknown function (DUF565) |
           chr3:21042781-21043840 REVERSE LENGTH=188
          Length = 188

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 98  GTRLGRILSAGGRQLLDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDXXXXXX 157
           G RL + +     +LL K+   +K++P K+F LL+GFY+A A +T +GQTGDWD      
Sbjct: 81  GLRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGL 140

Query: 158 XXXXIEGIGMLLYRKPPTVRTGRLQSFLLMLNYWKAGICLGLFVDAFKL 206
               +E IG L+YR    +   +++S + M NYWK G+ LGLF+D+FK 
Sbjct: 141 AVLVVECIGALMYRASIPL-INKMRSTITMFNYWKTGLALGLFLDSFKF 188