Miyakogusa Predicted Gene

Lj4g3v0365590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0365590.1 Non Chatacterized Hit- tr|K3YA40|K3YA40_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si011082,28.8,0.00000000000001,seg,NULL,CUFF.47143.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14095.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    96   2e-20

>AT2G14095.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4
           anthesis, C globular stage, petal differentiation and
           expansion stage; Has 106 Blast hits to 103 proteins in
           21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi
           - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10
           (source: NCBI BLink). | chr2:5932506-5933752 REVERSE
           LENGTH=234
          Length = 234

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 73  NAKVQPEGPASTMYTFPSWLRWVLGSVLSLVLPFW--KYWQKFQMIXXXXXXXXXXXXXX 130
           ++K+QP  P +  + FPSW RWV+GS +SLVL FW  +  QK + I              
Sbjct: 76  DSKMQP-SPPNQWFNFPSWGRWVIGSAISLVLSFWNNERLQKLKRIEGEAELVVEGVEAV 134

Query: 131 XXXXXXXXXXXXXXSEDVAEMFPKDSNLHNAALVLERASEHAAHGAQQTEEFIHKVEELK 190
                         +E++AE  P+ + L   ALVLE  SE AAH A  T++F+HKVE++ 
Sbjct: 135 AEMVEKVATATDEMAEEMAEKLPEKNKLKQVALVLEHISEVAAHEAHLTQDFLHKVEKVT 194

Query: 191 NDLDGLESFVEPVIEKIVKKQHGK 214
            D+D LE+ ++P+I+K V     K
Sbjct: 195 QDIDDLEAMIKPLIDKKVANAETK 218