Miyakogusa Predicted Gene

Lj4g3v0363530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0363530.1 tr|B4WJS9|B4WJS9_9SYNE 1,4-dihydroxy-2-naphthoate
phytyltransferase OS=Synechococcus sp. PCC 7335
GN,36.13,9e-19,UbiA,UbiA prenyltransferase family; SUBFAMILY NOT
NAMED,NULL; 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLT,CUFF.47013.1
         (257 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60600.2 | Symbols: ABC4 | UbiA prenyltransferase family prot...   186   2e-47
AT1G60600.1 | Symbols: ABC4 | UbiA prenyltransferase family prot...   166   2e-41

>AT1G60600.2 | Symbols: ABC4 | UbiA prenyltransferase family protein
           | chr1:22324807-22326759 REVERSE LENGTH=382
          Length = 382

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 104/124 (83%)

Query: 109 LIWRAIKLPIYSVAFVPLTVGSAAAYLQAGIFSARRYFVLLASSVLVITWLNLSNDVYDF 168
           LIWRAIKLP+YSVA VPLTVG++AAYL+ G+F ARRY  LL SS+L+ITWLNLSNDVYDF
Sbjct: 87  LIWRAIKLPMYSVALVPLTVGASAAYLETGLFLARRYVTLLLSSILIITWLNLSNDVYDF 146

Query: 169 DTGVDKNKKESVVNLVGSRTGTFIAAYSCLALGFVGLAWAAVVAGNMRSMLFLSCAIICG 228
           DTG DKNK ESVVNLVGSRTGT  AA + LALG  GL W ++ A N+R++L L+ AI+CG
Sbjct: 147 DTGADKNKMESVVNLVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCG 206

Query: 229 YIYQ 232
           Y+YQ
Sbjct: 207 YVYQ 210


>AT1G60600.1 | Symbols: ABC4 | UbiA prenyltransferase family protein
           | chr1:22324807-22326395 REVERSE LENGTH=287
          Length = 287

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/115 (68%), Positives = 95/115 (82%)

Query: 118 IYSVAFVPLTVGSAAAYLQAGIFSARRYFVLLASSVLVITWLNLSNDVYDFDTGVDKNKK 177
           +YSVA VPLTVG++AAYL+ G+F ARRY  LL SS+L+ITWLNLSNDVYDFDTG DKNK 
Sbjct: 1   MYSVALVPLTVGASAAYLETGLFLARRYVTLLLSSILIITWLNLSNDVYDFDTGADKNKM 60

Query: 178 ESVVNLVGSRTGTFIAAYSCLALGFVGLAWAAVVAGNMRSMLFLSCAIICGYIYQ 232
           ESVVNLVGSRTGT  AA + LALG  GL W ++ A N+R++L L+ AI+CGY+YQ
Sbjct: 61  ESVVNLVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQ 115