Miyakogusa Predicted Gene

Lj4g3v0353460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0353460.1 tr|G7L5N1|G7L5N1_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g078040 PE=4 SV=1,67.86,0.000000000004,F-box,F-box
domain, cyclin-like; no description,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; FBOX,F-box do,88081_g.1
         (84 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70970.1 | Symbols:  | F-box and associated interaction domai...    47   4e-06

>AT1G70970.1 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr1:26759834-26761042
          FORWARD LENGTH=402
          Length = 402

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 15 ILSFLPVKSLVRFKSVSKSWNSFISGSQFIKLHLHRSYS 53
          I+S+LP+KSL+RF  VSK W S I G QF  L+L RS +
Sbjct: 18 IMSWLPLKSLLRFVIVSKKWASIIRGEQFKALYLRRSMT 56