Miyakogusa Predicted Gene

Lj4g3v0341100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0341100.1 tr|I3SEI0|I3SEI0_LOTJA Alternative oxidase
OS=Lotus japonicus PE=2 SV=1,99.68,0,SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL; AOX,Alternative oxidase,CUFF.46967.1
         (314 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 | chr5:25683...   403   e-113
AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A |...   387   e-108
AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:790...   381   e-106
AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:102...   375   e-104
AT1G32350.1 | Symbols: AOX1D | alternative oxidase 1D | chr1:116...   373   e-103
AT4G22260.1 | Symbols: IM, IM1 | Alternative oxidase family prot...    69   3e-12

>AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 |
           chr5:25683965-25685664 REVERSE LENGTH=353
          Length = 353

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/305 (63%), Positives = 235/305 (77%), Gaps = 11/305 (3%)

Query: 14  FNSAARHQHGGGACGSLFWRRMSTLP--EVKDHQSEEKKSEVNRNDSSNNTVVPSYWGI- 70
           F   ++H  G     +L W  MS+    E KD     KK +    +   +  VPSYWGI 
Sbjct: 56  FKIGSKHVQGNF---NLRWMGMSSASAMEKKDENLTVKKGQ----NGGGSVAVPSYWGIE 108

Query: 71  -TRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKHHLPKTVTDKVAFRAVKFLRVLSDL 129
             + K+ R+DG++WPWNCF PW++Y+A++SID+ KHH+PK + DKVA+R VK LR+ +D+
Sbjct: 109 TAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDI 168

Query: 130 YFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTM 189
           +F+ RYGC AMMLET+AAVPGMVGGMLLHLKS+RKF+HSGGWIKALLEEAENERMHLMTM
Sbjct: 169 FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTM 228

Query: 190 TELVKPSWHERLLVITAQGXXXXXXXXXYLLSPKAAHRFVGYLEEEAVISYTDHLNAIER 249
            ELVKP W+ERLLV+  QG         Y++SP+ AHR VGYLEEEA+ SYT+ L  I+ 
Sbjct: 229 MELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDN 288

Query: 250 GEVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPA 309
           G++ENV APAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDI +QGKEL+EA A
Sbjct: 289 GKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAAA 348

Query: 310 PVGYH 314
           P+GYH
Sbjct: 349 PIGYH 353


>AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A |
           chr3:7906890-7908416 FORWARD LENGTH=354
          Length = 354

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 174/273 (63%), Positives = 215/273 (78%)

Query: 42  KDHQSEEKKSEVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSID 101
           K  ++E    +    ++  +  + SYWG+   K+ +EDG+EW WNCF PW++Y+AD++ID
Sbjct: 82  KKTENESTGGDAAGGNNKGDKGIASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITID 141

Query: 102 VTKHHLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKS 161
           + KHH+P T  D++A+  VK LR  +DL+F+ RYGC AMMLET+AAVPGMVGGMLLH KS
Sbjct: 142 LKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 201

Query: 162 LRKFQHSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGXXXXXXXXXYLLS 221
           LR+F+ SGGWIKALLEEAENERMHLMT  E+ KP W+ER LVIT QG         YL+S
Sbjct: 202 LRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLIS 261

Query: 222 PKAAHRFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKDATLKDVVTVIR 281
           PK AHR VGYLEEEA+ SYT+ L  +++G +ENVPAPAIAIDYWRLP DATL+DVV V+R
Sbjct: 262 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVR 321

Query: 282 ADEAHHRDVNHFASDIHHQGKELKEAPAPVGYH 314
           ADEAHHRDVNHFASDIH+QG+ELKEAPAP+GYH
Sbjct: 322 ADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354


>AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B |
           chr3:7904156-7905384 FORWARD LENGTH=325
          Length = 325

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/284 (62%), Positives = 219/284 (77%), Gaps = 2/284 (0%)

Query: 33  RRMSTLPEVKDHQSEEKKSEVNRNDSSNN--TVVPSYWGITRPKVRREDGTEWPWNCFSP 90
           R  S +   K   +EEK S   + D  N    ++ SYWG+   K+ +EDGTEW W+CF P
Sbjct: 42  RVFSKMTFEKKKTTEEKGSSGGKADQGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRP 101

Query: 91  WDSYRADVSIDVTKHHLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPG 150
           W++Y++D++ID+ KHH+P T+ DK+A+  VK LR  +DL+F+ RYGC AMMLET+AAVPG
Sbjct: 102 WETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 161

Query: 151 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGXX 210
           MVGGML+H KSLR+F+ SGGWIKALLEEAENERMHLMT  E+ KP+W+ER LVI  QG  
Sbjct: 162 MVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVIAVQGIF 221

Query: 211 XXXXXXXYLLSPKAAHRFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKD 270
                  YL+SPK AHR VGYLEEEA+ SYT+ L  ++ G +ENVPAPAIAIDYWRL  D
Sbjct: 222 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLEAD 281

Query: 271 ATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGYH 314
           ATL+DVV V+RADEAHHRDVNH+ASDIH+QG+ELKEAPAP+GYH
Sbjct: 282 ATLRDVVMVVRADEAHHRDVNHYASDIHYQGRELKEAPAPIGYH 325


>AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C |
           chr3:10229289-10230595 REVERSE LENGTH=329
          Length = 329

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 168/263 (63%), Positives = 210/263 (79%)

Query: 52  EVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKHHLPKTV 111
           +VN   +    ++ SYWG+   K+ +EDGTEW W+CF PW++Y+AD++ID+ KHH+P T+
Sbjct: 67  KVNDQGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTL 126

Query: 112 TDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGW 171
            DK+A+  VK LR  +DL+F+ RYGC A+MLET+AAVPGMVGGML+H KSLR+F+ SGGW
Sbjct: 127 PDKIAYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGW 186

Query: 172 IKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGXXXXXXXXXYLLSPKAAHRFVGY 231
           IKALLEEAENERMHLMT  E+ KP W+ER LVI+ QG         Y++SPK AHR VGY
Sbjct: 187 IKALLEEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGY 246

Query: 232 LEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVN 291
           LEEEA+ SYT+ L  ++ G +ENVPAPAIA+DYWRL  DATL+DVV V+RADEAHHRDVN
Sbjct: 247 LEEEAIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVN 306

Query: 292 HFASDIHHQGKELKEAPAPVGYH 314
           H+ASDIH+QG ELKEAPAP+GYH
Sbjct: 307 HYASDIHYQGHELKEAPAPIGYH 329


>AT1G32350.1 | Symbols: AOX1D | alternative oxidase 1D |
           chr1:11667237-11668569 REVERSE LENGTH=318
          Length = 318

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/301 (59%), Positives = 216/301 (71%), Gaps = 8/301 (2%)

Query: 21  QHGGGACGSLFWRRMSTLPEVKDHQSEEKKSEVNRNDSSNN-------TVVPSYWGITRP 73
           Q  G   G      +S LP V+   S +  S V+ N+   N        V+ +YWGI   
Sbjct: 19  QSSGLGIGGFRGHLISHLPNVR-LLSSDTSSPVSGNNQPENPIRTADGKVISTYWGIPPT 77

Query: 74  KVRREDGTEWPWNCFSPWDSYRADVSIDVTKHHLPKTVTDKVAFRAVKFLRVLSDLYFKE 133
           K+ + DG+ W WNCF PWDSY+ DVSIDVTKHH P   TDK A+  V+ L++   L+F+ 
Sbjct: 78  KITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQR 137

Query: 134 RYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMTELV 193
           ++ CHAM+LET+AAVPGMVGGMLLHLKSLR+F+HSGGWIKALLEEAENERMHLMT  EL 
Sbjct: 138 KHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELS 197

Query: 194 KPSWHERLLVITAQGXXXXXXXXXYLLSPKAAHRFVGYLEEEAVISYTDHLNAIERGEVE 253
           +P W+ER +V T QG         Y++SPK AHR  GYLEEEAV SYT+ L  I+ G+ E
Sbjct: 198 QPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFE 257

Query: 254 NVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGY 313
           N PAPAIAIDYWRLPKDATL+DVV VIRADEAHHRD+NH+ASDI  +G ELKEAPAP+GY
Sbjct: 258 NSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGHELKEAPAPIGY 317

Query: 314 H 314
           H
Sbjct: 318 H 318


>AT4G22260.1 | Symbols: IM, IM1 | Alternative oxidase family protein
           | chr4:11769967-11772350 REVERSE LENGTH=351
          Length = 351

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 81/192 (42%), Gaps = 22/192 (11%)

Query: 116 AFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 175
            F     +++L  LY ++R      +LETIA VP      +LH+     +     ++K  
Sbjct: 110 VFLTDSVIKILDTLY-RDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVH 168

Query: 176 LEEAENERMHLMTMTELVKPS-WHERLLVITAQGXXXXXXXXXYLLSPKAAHRFVGYLEE 234
             E+ NE  HL+ M EL   S W +R L               Y+LSP+ A+ F   +E 
Sbjct: 169 FAESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVES 228

Query: 235 EAVISYTDHLNAIERGEVENVPAPAIAIDYW-------------------RLPKDATLKD 275
            A  +Y   L A    E++N+PAP IA+ Y+                   R P    L D
Sbjct: 229 HAYETYDKFLKA-SGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYD 287

Query: 276 VVTVIRADEAHH 287
           V   IR DEA H
Sbjct: 288 VFVNIRDDEAEH 299