Miyakogusa Predicted Gene

Lj4g3v0340930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340930.1 Non Chatacterized Hit- tr|K4BNG5|K4BNG5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.73,4e-19,Zn-binding ribosomal proteins,Ribosomal protein,
zinc-binding domain; rpmF_bact: ribosomal protein L,CUFF.47004.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26740.1 | Symbols:  | Ribosomal L32p protein family | chr1:9...    81   2e-16
AT1G69485.1 | Symbols:  | Ribosomal L32p protein family | chr1:2...    64   2e-11

>AT1G26740.1 | Symbols:  | Ribosomal L32p protein family |
           chr1:9245280-9246555 REVERSE LENGTH=134
          Length = 134

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 18/128 (14%)

Query: 1   MATRFAILRGNGRN---LLGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTS------ 51
           MA R   L+        +L    L H      PL G+ D  +     VLPEF        
Sbjct: 1   MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEFDQNQPGLI 60

Query: 52  ---------PSFSFGDSMELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLP 102
                    PSF+F  SMELMAVP            NGPKALKP+ V++ C+ CGRV+LP
Sbjct: 61  EEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLP 120

Query: 103 HYYCCSGK 110
           H++CCSG+
Sbjct: 121 HFFCCSGE 128


>AT1G69485.1 | Symbols:  | Ribosomal L32p protein family |
           chr1:26118533-26119342 REVERSE LENGTH=63
          Length = 63

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 34/51 (66%)

Query: 60  MELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGK 110
           MELMAVP            NGPKA KP  V++ C+ CGRV+LPH+YCCSG+
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGE 51