Miyakogusa Predicted Gene

Lj4g3v0340800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340800.1 Non Chatacterized Hit- tr|K4BNG5|K4BNG5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,46.56,4e-19,Ribosomal_L32p,Ribosomal protein L32p; Zn-binding
ribosomal proteins,Ribosomal protein, zinc-binding,CUFF.46998.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26740.1 | Symbols:  | Ribosomal L32p protein family | chr1:9...    83   5e-17
AT1G69485.1 | Symbols:  | Ribosomal L32p protein family | chr1:2...    68   1e-12

>AT1G26740.1 | Symbols:  | Ribosomal L32p protein family |
           chr1:9245280-9246555 REVERSE LENGTH=134
          Length = 134

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 54/96 (56%), Gaps = 15/96 (15%)

Query: 33  PLAGSIDIGVPSSQPVLPEFTS---------------PSFSFGDSMELMAVPXXXXXXXX 77
           PL G+ D  +     VLPEF                 PSF+F  SMELMAVP        
Sbjct: 33  PLNGAFDRPISMPPLVLPEFDQNQPGLIEEKSFGFGLPSFAFNGSMELMAVPKKKISKHK 92

Query: 78  XXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGK 113
               NGPKALKP+PV++ C+ CGRV+LPH++CCSG+
Sbjct: 93  RGIRNGPKALKPVPVIIRCRSCGRVKLPHFFCCSGE 128


>AT1G69485.1 | Symbols:  | Ribosomal L32p protein family |
           chr1:26118533-26119342 REVERSE LENGTH=63
          Length = 63

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query: 63  MELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGK 113
           MELMAVP            NGPKA KP PV++ C+ CGRV+LPH+YCCSG+
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGE 51