Miyakogusa Predicted Gene

Lj4g3v0340770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340770.1 Non Chatacterized Hit- tr|B9SWA2|B9SWA2_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,43.65,0.0000000000008,seg,NULL,CUFF.46995.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64160.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   199   1e-51

>AT5G64160.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:25670941-25672318
           FORWARD LENGTH=227
          Length = 227

 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/247 (48%), Positives = 144/247 (58%), Gaps = 27/247 (10%)

Query: 1   MSLSLLQSYSSDEDEHHQPY----ISNSDEDHDGDGEPSTAAHPSLADRSIFDHXXXXXX 56
           MSL+LLQ YSS E+E  +        NSDED D D     ++       S+FD       
Sbjct: 1   MSLTLLQGYSSAEEEEAEERAFGDYDNSDEDGDNDVRRYESS-------SVFDFSASASS 53

Query: 57  XXXX---XXFDAFSEVSGPPQFLNNSVEEYNPVXXXXXXXXXXXXXXXXXKVKKDLPSGA 113
                     D FS++SGPP+FLNN  E  N                           G 
Sbjct: 54  AKNAGLPSADDVFSQISGPPEFLNNRTEADNEASARDAEHANRISRKKKKVKP----KGV 109

Query: 114 VLEAKPQLVGIHERVRSDINGSQPPXXXXXXXXXXXKRVPSVTNPTPEDAADLLRMCLQC 173
           V+EAKPQLVGIHERVR+DI+   PP           KR+ + TNP  E++ADLLRMC+QC
Sbjct: 110 VMEAKPQLVGIHERVRNDIDA--PPSSESGE-----KRISTATNPNAEESADLLRMCVQC 162

Query: 174 GIPKTFSNARGMVCPVCGDRPPKDPSTETKNKGSTIKDKEKSKRMKGQSSHASWKSETEM 233
           G+PKT+++ARGMVCP+CGDRP   P  + K KGSTIKDKEKSKRM+GQSSHASWKSETEM
Sbjct: 163 GVPKTYTSARGMVCPICGDRPL--PDVDAKKKGSTIKDKEKSKRMRGQSSHASWKSETEM 220

Query: 234 HLRQQFD 240
            LRQ FD
Sbjct: 221 QLRQTFD 227