Miyakogusa Predicted Gene
- Lj4g3v0340710.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0340710.1 Non Chatacterized Hit- tr|J3LSA8|J3LSA8_ORYBR
Uncharacterized protein (Fragment) OS=Oryza
brachyanth,50.75,0.000000000008,seg,NULL; Hyccin,Hyccin,CUFF.46958.1
(410 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64090.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 273 1e-73
AT5G21050.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 169 4e-42
>AT5G64090.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:25648069-25649415
FORWARD LENGTH=448
Length = 448
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 209/414 (50%), Gaps = 34/414 (8%)
Query: 23 TPNPQKTDDPMHSWWESVSKARSRIHSLATI------LPNXXXXXXXXXXXXERPXXXXX 76
+P+ DPMHSWWESVSK RSRI SL+++ + +RP
Sbjct: 43 SPSAAADRDPMHSWWESVSKQRSRILSLSSLLSGDSHFEDGDVTPISSLADSDRPALSLL 102
Query: 77 XXXXXXXXXXXX----XXXXXXDPLCHWLYDTFLSSDPXXXXXXXXXXXXXXXXXXXXXX 132
DPLC WLY+T+LSSDP
Sbjct: 103 SSRAAYSLISNSLCNPASGSGSDPLCQWLYETYLSSDPPLRLVVLSFFPLLVGMYLSRIH 162
Query: 133 XXXXXXXXXXXXXXSGFEAVLLALYAAETKSRNGKPLIATVPDLSLPSIYHSPLRKPQNS 192
SGFEAVLLA+YAAE K+R GKP++ +PDLS PS+YH+P S
Sbjct: 163 SSDSTSLPSL----SGFEAVLLAIYAAEVKARAGKPILVHIPDLSQPSLYHTPRNGVDKS 218
Query: 193 -NANAPSSVAVISPPLEPLLAVKSTKRASIVGAALQSYFSQISHMPSWSKLEFCRFLAGW 251
++N +SV V+SP LEP +AVKSTKRASIVG LQ YF +IS MP+WSKLEFC+F A W
Sbjct: 219 RDSNPTASVGVLSPQLEPQIAVKSTKRASIVGVGLQCYFKEISQMPAWSKLEFCKFSASW 278
Query: 252 AGQDCPCRRDLDRVPXXXXXXXXXXXXXXXXXXXXCDREIEIESVGEMMGKVQIHDSDGL 311
AGQDC C+ +D R +EIE E ++ I +++
Sbjct: 279 AGQDCDCKEKIDE-DEDKVLALTNGFGDSSSFNGSSGRSLEIE---EDFDRLAIRENEEQ 334
Query: 312 AKGDR----------IPLPWEILQPALRILGHCLFAPLNPQEVKDAASFAVRCLYARASH 361
+ IPLPWE+ QP LRILGHCL +PLN ++VKDAAS AVR LYARASH
Sbjct: 335 LSSNGGGGGVGRGVRIPLPWELFQPTLRILGHCLLSPLNTEDVKDAASNAVRSLYARASH 394
Query: 362 DLVPQAILATRSLIQLXXXXXXXXXXXXXXXXXXXX-----XXXKKPEILLVSK 410
DL PQAILATRSL+ L KKPEILL SK
Sbjct: 395 DLNPQAILATRSLVNLDTSARTSGKTVAAETVNGSSNVNTPSKAKKPEILLASK 448
>AT5G21050.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 14
plant structures; EXPRESSED DURING: 8 growth stages;
CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206
proteins in 60 species: Archae - 0; Bacteria - 0;
Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0;
Other Eukaryotes - 11 (source: NCBI BLink). |
chr5:7147890-7148957 FORWARD LENGTH=355
Length = 355
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 146/284 (51%), Gaps = 35/284 (12%)
Query: 95 DPLCHWLYDTFLSSDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGFEAVLL 154
+ LC WLYDTF S++P +GFEAVLL
Sbjct: 82 NNLCRWLYDTFQSAEPSLQLLVLRFVPLIAGLYLSRVPLRQPQ---------AGFEAVLL 132
Query: 155 ALYAAETKSRNGKPLIATVPDLSLPSIYHSPLRKPQNSNANAPSSVAVISPPLEPLLAVK 214
ALYA ET SR G+ + +PDLS PSIYH +N+N+ + +AVIS L+P V+
Sbjct: 133 ALYAHETTSRAGQAITVNIPDLSYPSIYHESKGLTRNNNSTCLN-IAVISSTLDPHGTVR 191
Query: 215 STKRASIVGAALQSYFSQISHMPSWSKLEFCRFLAGWAGQDCPCRRDLDRVPXXXXXXXX 274
ST+RA IVG AL+ Y+S+IS MP SKL FC WAGQ+ + V
Sbjct: 192 STRRARIVGVALELYYSKISKMPRESKLNFCESCEKWAGQNGETEQSSRAVIPTLSD--- 248
Query: 275 XXXXXXXXXXXXCDREIEIESVGEMMGKVQIHDSDGLAKGDRIPLPWEILQPALRILGHC 334
D E E+V +G DS RIPLPWE+LQP LRILGHC
Sbjct: 249 -------------DSWREEENVA--IGGRSERDS------GRIPLPWELLQPILRILGHC 287
Query: 335 LFA-PLNPQEVKDAASFAVRCLYARASHDLVPQAILATRSLIQL 377
L + +E+ +AA+ A + LY R+ HD+ P+AILAT SL++L
Sbjct: 288 LLGLKMEDRELSEAANKACQSLYLRSLHDINPKAILATGSLLRL 331