Miyakogusa Predicted Gene

Lj4g3v0340710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340710.1 Non Chatacterized Hit- tr|J3LSA8|J3LSA8_ORYBR
Uncharacterized protein (Fragment) OS=Oryza
brachyanth,50.75,0.000000000008,seg,NULL; Hyccin,Hyccin,CUFF.46958.1
         (410 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64090.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   273   1e-73
AT5G21050.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN:...   169   4e-42

>AT5G64090.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:25648069-25649415
           FORWARD LENGTH=448
          Length = 448

 Score =  273 bits (699), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 209/414 (50%), Gaps = 34/414 (8%)

Query: 23  TPNPQKTDDPMHSWWESVSKARSRIHSLATI------LPNXXXXXXXXXXXXERPXXXXX 76
           +P+     DPMHSWWESVSK RSRI SL+++        +            +RP     
Sbjct: 43  SPSAAADRDPMHSWWESVSKQRSRILSLSSLLSGDSHFEDGDVTPISSLADSDRPALSLL 102

Query: 77  XXXXXXXXXXXX----XXXXXXDPLCHWLYDTFLSSDPXXXXXXXXXXXXXXXXXXXXXX 132
                                 DPLC WLY+T+LSSDP                      
Sbjct: 103 SSRAAYSLISNSLCNPASGSGSDPLCQWLYETYLSSDPPLRLVVLSFFPLLVGMYLSRIH 162

Query: 133 XXXXXXXXXXXXXXSGFEAVLLALYAAETKSRNGKPLIATVPDLSLPSIYHSPLRKPQNS 192
                         SGFEAVLLA+YAAE K+R GKP++  +PDLS PS+YH+P      S
Sbjct: 163 SSDSTSLPSL----SGFEAVLLAIYAAEVKARAGKPILVHIPDLSQPSLYHTPRNGVDKS 218

Query: 193 -NANAPSSVAVISPPLEPLLAVKSTKRASIVGAALQSYFSQISHMPSWSKLEFCRFLAGW 251
            ++N  +SV V+SP LEP +AVKSTKRASIVG  LQ YF +IS MP+WSKLEFC+F A W
Sbjct: 219 RDSNPTASVGVLSPQLEPQIAVKSTKRASIVGVGLQCYFKEISQMPAWSKLEFCKFSASW 278

Query: 252 AGQDCPCRRDLDRVPXXXXXXXXXXXXXXXXXXXXCDREIEIESVGEMMGKVQIHDSDGL 311
           AGQDC C+  +D                         R +EIE   E   ++ I +++  
Sbjct: 279 AGQDCDCKEKIDE-DEDKVLALTNGFGDSSSFNGSSGRSLEIE---EDFDRLAIRENEEQ 334

Query: 312 AKGDR----------IPLPWEILQPALRILGHCLFAPLNPQEVKDAASFAVRCLYARASH 361
              +           IPLPWE+ QP LRILGHCL +PLN ++VKDAAS AVR LYARASH
Sbjct: 335 LSSNGGGGGVGRGVRIPLPWELFQPTLRILGHCLLSPLNTEDVKDAASNAVRSLYARASH 394

Query: 362 DLVPQAILATRSLIQLXXXXXXXXXXXXXXXXXXXX-----XXXKKPEILLVSK 410
           DL PQAILATRSL+ L                            KKPEILL SK
Sbjct: 395 DLNPQAILATRSLVNLDTSARTSGKTVAAETVNGSSNVNTPSKAKKPEILLASK 448


>AT5G21050.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN: 14
           plant structures; EXPRESSED DURING: 8 growth stages;
           CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619);
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206
           proteins in 60 species: Archae - 0; Bacteria - 0;
           Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0;
           Other Eukaryotes - 11 (source: NCBI BLink). |
           chr5:7147890-7148957 FORWARD LENGTH=355
          Length = 355

 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/284 (39%), Positives = 146/284 (51%), Gaps = 35/284 (12%)

Query: 95  DPLCHWLYDTFLSSDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGFEAVLL 154
           + LC WLYDTF S++P                                    +GFEAVLL
Sbjct: 82  NNLCRWLYDTFQSAEPSLQLLVLRFVPLIAGLYLSRVPLRQPQ---------AGFEAVLL 132

Query: 155 ALYAAETKSRNGKPLIATVPDLSLPSIYHSPLRKPQNSNANAPSSVAVISPPLEPLLAVK 214
           ALYA ET SR G+ +   +PDLS PSIYH      +N+N+   + +AVIS  L+P   V+
Sbjct: 133 ALYAHETTSRAGQAITVNIPDLSYPSIYHESKGLTRNNNSTCLN-IAVISSTLDPHGTVR 191

Query: 215 STKRASIVGAALQSYFSQISHMPSWSKLEFCRFLAGWAGQDCPCRRDLDRVPXXXXXXXX 274
           ST+RA IVG AL+ Y+S+IS MP  SKL FC     WAGQ+    +    V         
Sbjct: 192 STRRARIVGVALELYYSKISKMPRESKLNFCESCEKWAGQNGETEQSSRAVIPTLSD--- 248

Query: 275 XXXXXXXXXXXXCDREIEIESVGEMMGKVQIHDSDGLAKGDRIPLPWEILQPALRILGHC 334
                        D   E E+V   +G     DS       RIPLPWE+LQP LRILGHC
Sbjct: 249 -------------DSWREEENVA--IGGRSERDS------GRIPLPWELLQPILRILGHC 287

Query: 335 LFA-PLNPQEVKDAASFAVRCLYARASHDLVPQAILATRSLIQL 377
           L    +  +E+ +AA+ A + LY R+ HD+ P+AILAT SL++L
Sbjct: 288 LLGLKMEDRELSEAANKACQSLYLRSLHDINPKAILATGSLLRL 331