Miyakogusa Predicted Gene

Lj4g3v0310500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0310500.1 Non Chatacterized Hit- tr|K4C232|K4C232_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,43.31,5e-18,DNA
POLYMERASE DELTA SUBUNIT 4,NULL; DNA_pol_delta_4,DNA polymerase delta,
subunit 4,CUFF.46817.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09815.1 | Symbols: POLD4 | polymerase delta 4 | chr1:3189460...   105   5e-24

>AT1G09815.1 | Symbols: POLD4 | polymerase delta 4 |
           chr1:3189460-3190050 FORWARD LENGTH=124
          Length = 124

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 73/117 (62%), Gaps = 12/117 (10%)

Query: 2   KSVSGIYRQKKKN-----PAPTKSSKKQPPSRAAT--TAVPQTPAL-----PDLQDESNG 49
           K++ G Y+Q K N          SS+K  P  AA   + V Q  AL      DL ++ + 
Sbjct: 6   KNLKGFYKQTKSNITGGISKSKPSSRKVAPKHAAAQGSDVTQPAALISHGSVDLNEDYDK 65

Query: 50  NEAVLRQFDLNMAYGPCIGMPRLARWERAQKLGLNPPQEIERLLKSGKVQAESLWNG 106
            E +LRQFD+N+ YGPC+GM RL RWERA +LG+NPP EIE+LLK+GKVQ + LW G
Sbjct: 66  EEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDCLWQG 122