Miyakogusa Predicted Gene

Lj4g3v0286120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0286120.1 CUFF.46929.1
         (941 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20910.2 | Symbols: HEN1 | double-stranded RNA binding protei...   832   0.0  
AT4G20910.1 | Symbols: HEN1, CRM2 | double-stranded RNA binding ...   832   0.0  
AT4G20920.1 | Symbols:  | double-stranded RNA-binding domain (Ds...   496   e-140

>AT4G20910.2 | Symbols: HEN1 | double-stranded RNA binding
           protein-related / DsRBD protein-related |
           chr4:11186264-11190575 REVERSE LENGTH=942
          Length = 942

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/943 (48%), Positives = 607/943 (64%), Gaps = 37/943 (3%)

Query: 13  KLTVTPKAVIHQKFGKKACYVVEEVKEVCQAECPGLNIPQMGPCLYRCTLQLPELSVMSG 72
           K T TPKA+IHQKFG KA Y VEEV +  Q+ C GL IPQ GPCLYRC LQLPE SV+S 
Sbjct: 6   KHTPTPKAIIHQKFGAKASYTVEEVHDSSQSGCLGLAIPQKGPCLYRCHLQLPEFSVVSN 65

Query: 73  TFKKKKDAEQCAAEMAIEKLGICSETGDPSPQEAQESLVSRLTYLFSEKFLIPESDHPHP 132
            FKKKKD+EQ AAE+A++KLGI  +  D +  EA++ +V R+ Y+FS++FL  E    HP
Sbjct: 66  VFKKKKDSEQSAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFSDEFLSAE----HP 121

Query: 133 LSGHLRATLWRKGDLCGAVPVSSIAAYDPKIFSLCKCIDPEVESNPLLVISYIMRATAKL 192
           L  HLRA L R G+ CG+VPVS IA  D KI S CK I+P VES+P L ISY+M+A AKL
Sbjct: 122 LGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVMKAAAKL 181

Query: 193 HGFLATSEQHLWVRKLSPYPQDVIESLMKE-DGSRECIQVAAVCIPSSMEKSVETVTLHI 251
             ++  S   L  R+ + YP +++E+L      S    +VAAV IP   E+ VE  TL+I
Sbjct: 182 ADYIVASPHGL--RRKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVELDTLYI 239

Query: 252 SLREYYLDVIADKLGLDNGTNVMISRNLSKVS--SETRLFFAAPKSHPLDPSSKFA--NG 307
           S   +YLD IA++LGL +G  VMISR   K S  SE RL+   PK + LD SS  +  + 
Sbjct: 240 SSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEIPKKY-LDNSSDASGTSN 298

Query: 308 KETLHSEGSLNVRATYLSGQDIVGDAVLSSIGYTRKSRDLFFEDVTVRSYYRMLLGKTPE 367
           +++ H   S N RA+Y+ GQDI GDA+L+S+GY  KS DL ++DVTV S+YR+  G +P 
Sbjct: 299 EDSSHIVKSRNARASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPN 358

Query: 368 GIYKLSREAILAAELPSRFTTRANWRGSFPRDILLMFCRQHRLSEPLFSVVNPPLKVADA 427
           GIYK+SR+A++AA+LP  FTT++NWRG  PR+IL +FC QHRL+EP+ S    P+K    
Sbjct: 359 GIYKISRQAVIAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTAPVKSLSD 418

Query: 428 GTKATEH-----VNGASGTASPKQSDK----EVFKCEIKLLSRLEDIILLCSPEDCFKKQ 478
             ++ +      V+ A+   S ++ D       F+CE+K+ ++ +D++L CSP   ++K+
Sbjct: 419 IFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDLVLECSPRKFYEKE 478

Query: 479 NDAIQNASLKILSWLNKYFKSMTVSIEGLYETAGNFNIQICSQNLLRD---ILAGQSIRD 535
           NDAIQNASLK L W +K+F  + V  E   +T  + + +  S N+      +    S   
Sbjct: 479 NDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQKEHSSES 538

Query: 536 CQLNAIQCNELLEPICINSSYDMTGNGGCSLKIEGLDSGVYPSNGSLPCISYSVSLVVEG 595
              N +   + ++ I   S   +  +   ++  E    G  P   +              
Sbjct: 539 KNTNVLSAEKRVQSITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANC 598

Query: 596 ENMKEVIEGCNEFEFEMGVGAVIPSVEEVVMQMSVGQCAYF--TTNLVTSDLIFASVGDS 653
           E+  E+IE   E EFE+G G++ P +E  V QM+VG+ A F  T       LI A   D+
Sbjct: 599 ESSVELIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFRMTPPDAAEALILAVGSDT 658

Query: 654 VKMLSLLSSKTFCVEYEISLTKVAEPPEERMEQALFSPPLSKQRVEFAVQQIVESRATSL 713
           V++ SLLS +  C+ Y I L  V  P EERME A F PPLSKQRVE+A++ I ES A++L
Sbjct: 659 VRIRSLLSERP-CLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTL 717

Query: 714 VDFGCGSGSLLEALLNYTISLEKIVGVDISQKGLARAAKVLNSKLVTNAGVQQTNIQSIT 773
           VDFGCGSGSLL++LL+Y  SL+ I+GVDIS KGLARAAK+L+ KL   A     N++S T
Sbjct: 718 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA----CNVKSAT 773

Query: 774 FYEGSITSFDSRLHGFDIGTCLEVIEHMDEDQACLFGDVALSCFCPRILIVSTPNFEYNV 833
            Y+GSI  FDSRLH  DIGTCLEVIEHM+EDQAC FG+  LS F P++LIVSTPN+E+N 
Sbjct: 774 LYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNT 833

Query: 834 VLQKSNPSTQDEEDSDEKTLLQSCKFRNHDHKFEWTREQFEQWASDLAARHNYSVEFSGV 893
           +LQ+S P TQ+E +S+     Q  KFRNHDHKFEWTREQF QWAS L  RHNYSVEFSGV
Sbjct: 834 ILQRSTPETQEENNSEP----QLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGV 889

Query: 894 GGSADVEPGFASQIAVFKRDWKLEDDILKQADTERHYNVIWEW 936
           GGS +VEPGFASQIA+F+R+    +++ +   + + Y VIWEW
Sbjct: 890 GGSGEVEPGFASQIAIFRREASSVENVAES--SMQPYKVIWEW 930


>AT4G20910.1 | Symbols: HEN1, CRM2 | double-stranded RNA binding
           protein-related / DsRBD protein-related |
           chr4:11186264-11190575 REVERSE LENGTH=942
          Length = 942

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/943 (48%), Positives = 607/943 (64%), Gaps = 37/943 (3%)

Query: 13  KLTVTPKAVIHQKFGKKACYVVEEVKEVCQAECPGLNIPQMGPCLYRCTLQLPELSVMSG 72
           K T TPKA+IHQKFG KA Y VEEV +  Q+ C GL IPQ GPCLYRC LQLPE SV+S 
Sbjct: 6   KHTPTPKAIIHQKFGAKASYTVEEVHDSSQSGCLGLAIPQKGPCLYRCHLQLPEFSVVSN 65

Query: 73  TFKKKKDAEQCAAEMAIEKLGICSETGDPSPQEAQESLVSRLTYLFSEKFLIPESDHPHP 132
            FKKKKD+EQ AAE+A++KLGI  +  D +  EA++ +V R+ Y+FS++FL  E    HP
Sbjct: 66  VFKKKKDSEQSAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFSDEFLSAE----HP 121

Query: 133 LSGHLRATLWRKGDLCGAVPVSSIAAYDPKIFSLCKCIDPEVESNPLLVISYIMRATAKL 192
           L  HLRA L R G+ CG+VPVS IA  D KI S CK I+P VES+P L ISY+M+A AKL
Sbjct: 122 LGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVMKAAAKL 181

Query: 193 HGFLATSEQHLWVRKLSPYPQDVIESLMKE-DGSRECIQVAAVCIPSSMEKSVETVTLHI 251
             ++  S   L  R+ + YP +++E+L      S    +VAAV IP   E+ VE  TL+I
Sbjct: 182 ADYIVASPHGL--RRKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVELDTLYI 239

Query: 252 SLREYYLDVIADKLGLDNGTNVMISRNLSKVS--SETRLFFAAPKSHPLDPSSKFA--NG 307
           S   +YLD IA++LGL +G  VMISR   K S  SE RL+   PK + LD SS  +  + 
Sbjct: 240 SSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEIPKKY-LDNSSDASGTSN 298

Query: 308 KETLHSEGSLNVRATYLSGQDIVGDAVLSSIGYTRKSRDLFFEDVTVRSYYRMLLGKTPE 367
           +++ H   S N RA+Y+ GQDI GDA+L+S+GY  KS DL ++DVTV S+YR+  G +P 
Sbjct: 299 EDSSHIVKSRNARASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPN 358

Query: 368 GIYKLSREAILAAELPSRFTTRANWRGSFPRDILLMFCRQHRLSEPLFSVVNPPLKVADA 427
           GIYK+SR+A++AA+LP  FTT++NWRG  PR+IL +FC QHRL+EP+ S    P+K    
Sbjct: 359 GIYKISRQAVIAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTAPVKSLSD 418

Query: 428 GTKATEH-----VNGASGTASPKQSDK----EVFKCEIKLLSRLEDIILLCSPEDCFKKQ 478
             ++ +      V+ A+   S ++ D       F+CE+K+ ++ +D++L CSP   ++K+
Sbjct: 419 IFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDLVLECSPRKFYEKE 478

Query: 479 NDAIQNASLKILSWLNKYFKSMTVSIEGLYETAGNFNIQICSQNLLRD---ILAGQSIRD 535
           NDAIQNASLK L W +K+F  + V  E   +T  + + +  S N+      +    S   
Sbjct: 479 NDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQKEHSSES 538

Query: 536 CQLNAIQCNELLEPICINSSYDMTGNGGCSLKIEGLDSGVYPSNGSLPCISYSVSLVVEG 595
              N +   + ++ I   S   +  +   ++  E    G  P   +              
Sbjct: 539 KNTNVLSAEKRVQSITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANC 598

Query: 596 ENMKEVIEGCNEFEFEMGVGAVIPSVEEVVMQMSVGQCAYF--TTNLVTSDLIFASVGDS 653
           E+  E+IE   E EFE+G G++ P +E  V QM+VG+ A F  T       LI A   D+
Sbjct: 599 ESSVELIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFRMTPPDAAEALILAVGSDT 658

Query: 654 VKMLSLLSSKTFCVEYEISLTKVAEPPEERMEQALFSPPLSKQRVEFAVQQIVESRATSL 713
           V++ SLLS +  C+ Y I L  V  P EERME A F PPLSKQRVE+A++ I ES A++L
Sbjct: 659 VRIRSLLSERP-CLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTL 717

Query: 714 VDFGCGSGSLLEALLNYTISLEKIVGVDISQKGLARAAKVLNSKLVTNAGVQQTNIQSIT 773
           VDFGCGSGSLL++LL+Y  SL+ I+GVDIS KGLARAAK+L+ KL   A     N++S T
Sbjct: 718 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA----CNVKSAT 773

Query: 774 FYEGSITSFDSRLHGFDIGTCLEVIEHMDEDQACLFGDVALSCFCPRILIVSTPNFEYNV 833
            Y+GSI  FDSRLH  DIGTCLEVIEHM+EDQAC FG+  LS F P++LIVSTPN+E+N 
Sbjct: 774 LYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNT 833

Query: 834 VLQKSNPSTQDEEDSDEKTLLQSCKFRNHDHKFEWTREQFEQWASDLAARHNYSVEFSGV 893
           +LQ+S P TQ+E +S+     Q  KFRNHDHKFEWTREQF QWAS L  RHNYSVEFSGV
Sbjct: 834 ILQRSTPETQEENNSEP----QLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGV 889

Query: 894 GGSADVEPGFASQIAVFKRDWKLEDDILKQADTERHYNVIWEW 936
           GGS +VEPGFASQIA+F+R+    +++ +   + + Y VIWEW
Sbjct: 890 GGSGEVEPGFASQIAIFRREASSVENVAES--SMQPYKVIWEW 930


>AT4G20920.1 | Symbols:  | double-stranded RNA-binding domain
           (DsRBD)-containing protein | chr4:11194177-11197577
           REVERSE LENGTH=743
          Length = 743

 Score =  496 bits (1278), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 315/788 (39%), Positives = 442/788 (56%), Gaps = 101/788 (12%)

Query: 10  AKRKLTVTPKAVIHQKFGKKACYVVEEVKEVCQAECPGLNIPQMGPCLYRCTLQLPELSV 69
            + K T+TPK +I QKFG KA Y +EEV                  CLYRC LQLPE SV
Sbjct: 3   GEEKQTLTPKEMILQKFGVKAIYRIEEVH------------VSSNDCLYRCHLQLPEFSV 50

Query: 70  MSGTFKKKKDAEQCAAEMAIEKLGICSETGDPSPQ---EAQESLVSRLTYLFSEKFLIPE 126
           +S  FK+KKD+EQ AAE+A+EKLGI S+  D       EA  ++V R+ Y+FS++FL  +
Sbjct: 51  VSNVFKRKKDSEQSAAELALEKLGIQSQDDDDVDITVDEAWNNIVERIKYIFSDEFLSVD 110

Query: 127 SDHPHPLSGHLRATLWRKGDLCGAVPVSSIAAYDPKIFSLCKCIDPEVESNPLLVISYIM 186
               HPL GHLRA L R G+ CG++PVS IA +D KI S CK IDP VES+P+L++SY+M
Sbjct: 111 ----HPLGGHLRAALQRDGERCGSLPVSVIATFDAKINSRCKVIDPSVESDPILLMSYVM 166

Query: 187 RATAKLHGFLATSEQHLWVRKLSPYPQDVIESLMKEDGSRECIQVAAVCIPSSM--EKSV 244
           +A AKL  ++  S     +R+  PYP   I++L       + I+  AV +  ++  E+ V
Sbjct: 167 KAAAKLPDYIVVSPHVDSLRRKKPYPPATIKALATT--HVKSIKAEAVHLQCTVGGEEVV 224

Query: 245 ETVTLHISLREYYLDVIADKLGLDNGTNVMISRNLSKVSS--ETRLFFAAPKSHPLDPSS 302
           + VTL IS   YYLD+IADKLGL +G+ VMISR + K SS  E R++ A PK    D S 
Sbjct: 225 KPVTLDISSGRYYLDIIADKLGLKDGSQVMISRTIGKTSSGYECRVYAAIPKLKSSDNSW 284

Query: 303 KFANGK---ETLHSEGSLNVRATYLSGQDIVGDAVLSSIGYTRKSRDLFFEDVTVRSYYR 359
           K    +   E+ H E S N +A+++ G DI GDA+++S+GY                 +R
Sbjct: 285 KAREKRPIIESSHLEKSRNAKASFVCGVDIHGDAIVASVGYP----------------WR 328

Query: 360 MLLGKTPEGIYKLSREAILAAELPSRFTTRANWRGSFPRDILLMFCRQHRLSEPLFSVVN 419
           +  G +P GIYKLSREAI+AA+LP  FTT++ WRG FPR+IL MFCRQ +L EP+F++  
Sbjct: 329 ICCGISPNGIYKLSREAIIAAQLPFSFTTKSTWRGPFPREILCMFCRQQQLVEPIFTIST 388

Query: 420 PPLKVADAGTKATEHVNGASGTASPKQSDKE------------------------VFKCE 455
            P+K      ++ + +  +       + D++                         ++CE
Sbjct: 389 APVKPMSCILRSYQKLKDSECDEKDSECDEKDSECDDSEYQYTSKGKEEIPESGTGYRCE 448

Query: 456 IKLLSRLEDIILLCSPEDCFKKQNDAIQNASLKILSWLNKYFKSMTVSIEGLYETAGNFN 515
           +K+LS+ +D++L CS    ++K+N AIQNASL  LSWL++           L++      
Sbjct: 449 VKILSKSQDLVLDCSSRKFYEKENHAIQNASLNALSWLSR-----------LFDEGDGDP 497

Query: 516 IQICSQNLLRDILAGQSIRDCQLNAIQCNELLEPICINSSYDMTGNGGCSLKIEGLDSGV 575
           +QIC  +   D +  Q I      A+          +N   D        ++I+ +    
Sbjct: 498 LQICYTDDHLDAVFQQRI--LMKEAVPKGHFRNRDEMNQYEDQ-------VRIQTI---- 544

Query: 576 YPSNGSLPCISYSVSLVV------EGENMKEVIEGCNEFEFEMGVGAVIPSVEEVVMQMS 629
             + GSL  I YSV L V      +G++ KE+IE   E EFE+G G++ P +E VV Q+ 
Sbjct: 545 --TKGSLVSICYSVYLDVDADFSKDGKSKKELIESNEEIEFEVGNGSMNPHLEAVVTQLV 602

Query: 630 VGQCAYFTTNLVTSDLIFASVGDSVKMLSLLSSKTFCVEYEISLTKVAEPPEERMEQALF 689
           VGQ A F TN    DL   +   + +  SLLS      EY + L  V  P E+R+E   F
Sbjct: 603 VGQYARFLTNAPAEDLFVTAATGTQRDRSLLSD-VAGFEYCVRLLGVKGPTEKRIEADFF 661

Query: 690 SPPLSKQRVEFAVQQIVESRATSLVDFGCGSGSLLEALLNYTISLEKIVGVDISQKGLAR 749
            P LSKQR+E+ V+ I ES A++LVDFGCGSGSLL ++L+   SL+ I GVDIS K L R
Sbjct: 662 KPSLSKQRLEYVVKHIKESSASTLVDFGCGSGSLLASILDCPTSLQTIAGVDISHKSLTR 721

Query: 750 AAKVLNSK 757
           AAK+   K
Sbjct: 722 AAKIATFK 729