Miyakogusa Predicted Gene
- Lj4g3v0280790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0280790.1 tr|E4MW07|E4MW07_THEHA mRNA, clone: RTFL01-07-E01
OS=Thellungiella halophila PE=2 SV=1,48.08,2e-19,HMG_BOX_2,High
mobility group, superfamily; seg,NULL; high mobility group,High
mobility group, super,CUFF.46764.1
(158 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34450.1 | Symbols: | HMG-box (high mobility group) DNA-bind... 147 3e-36
AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-bind... 142 7e-35
AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch... 91 3e-19
AT3G51880.3 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch... 91 4e-19
AT3G51880.1 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch... 91 4e-19
AT3G51880.4 | Symbols: HMGB1 | high mobility group B1 | chr3:192... 91 4e-19
AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | high mobility ... 90 8e-19
AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | high mobility group ... 89 1e-18
AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | high mobility group ... 89 1e-18
AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | high mobility group ... 89 1e-18
AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob... 86 1e-17
AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob... 86 1e-17
AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob... 85 2e-17
AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | high mobility group ... 83 6e-17
AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | high mobility group ... 83 7e-17
AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | high mobility group ... 77 5e-15
AT5G23420.1 | Symbols: HMGB6 | high-mobility group box 6 | chr5:... 67 3e-12
>AT2G34450.1 | Symbols: | HMG-box (high mobility group) DNA-binding
family protein | chr2:14527918-14529448 REVERSE
LENGTH=151
Length = 151
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Query: 21 PATVSASSRKLVLRVKSSEQMKRXXXXXXX-XXXXXXXXXXXXXRIDANKPKKPPTAFFY 79
P+ SSR L L VKSSE +R ++ PKKP TAFF+
Sbjct: 13 PSCSGGSSRNLELAVKSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAFFF 72
Query: 80 FLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYN 139
FL+DFRK++Q +NPDVK+MR+IGK+CGEKWKTMTYEEKV+YYDIATEKR EF RAMTEY
Sbjct: 73 FLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYT 132
Query: 140 KKMESGEFEDTDEELEFYE 158
K+MESG ++++ + ++ E
Sbjct: 133 KRMESGAHDESETDSDYSE 151
>AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-binding
family protein | chr2:14527918-14529448 REVERSE
LENGTH=152
Length = 152
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 95/140 (67%), Gaps = 2/140 (1%)
Query: 21 PATVSASSRKLVLRVKSSEQMKRXXXXXXX-XXXXXXXXXXXXXRIDANKPKKPPTAFFY 79
P+ SSR L L VKSSE +R ++ PKKP TAFF+
Sbjct: 13 PSCSGGSSRNLELAVKSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAFFF 72
Query: 80 FLEDFRKEFQVQNPDVKTMRD-IGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEY 138
FL+DFRK++Q +NPDVK+MR+ IGK+CGEKWKTMTYEEKV+YYDIATEKR EF RAMTEY
Sbjct: 73 FLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEY 132
Query: 139 NKKMESGEFEDTDEELEFYE 158
K+MESG ++++ + ++ E
Sbjct: 133 TKRMESGAHDESETDSDYSE 152
>AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=185
Length = 185
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+ P+AFF FLEDFR F+ +NP+VK + +GK+ G+KWK+M+ EK Y + A
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 126 EKRAEFDRAMTEYNKKMESGEFE 148
+++AE+++ M YNK +E G E
Sbjct: 109 KRKAEYEKQMDAYNKNLEEGSDE 131
>AT3G51880.3 | Symbols: HMGB1, NFD1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=178
Length = 178
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+ P+AFF FLEDFR F+ +NP+VK + +GK+ G+KWK+M+ EK Y + A
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 126 EKRAEFDRAMTEYNKKMESGEFE 148
+++AE+++ M YNK +E G E
Sbjct: 109 KRKAEYEKQMDAYNKNLEEGSDE 131
>AT3G51880.1 | Symbols: HMGB1, NFD1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=178
Length = 178
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+ P+AFF FLEDFR F+ +NP+VK + +GK+ G+KWK+M+ EK Y + A
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 126 EKRAEFDRAMTEYNKKMESGEFE 148
+++AE+++ M YNK +E G E
Sbjct: 109 KRKAEYEKQMDAYNKNLEEGSDE 131
>AT3G51880.4 | Symbols: HMGB1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=161
Length = 161
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+ P+AFF FLEDFR F+ +NP+VK + +GK+ G+KWK+M+ EK Y + A
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 126 EKRAEFDRAMTEYNKKMESGEFE 148
+++AE+++ M YNK +E G E
Sbjct: 109 KRKAEYEKQMDAYNKNLEEGSDE 131
>AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | high mobility
group B5 | chr4:16887363-16888184 REVERSE LENGTH=125
Length = 125
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 60/88 (68%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D N+PKKPP+ FF FL+DFRKEF + NPD K++ ++G++ G+KWKTMT EE+ + +
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQ 89
Query: 126 EKRAEFDRAMTEYNKKMESGEFEDTDEE 153
K+ E+ M +YN ++ +G D+E
Sbjct: 90 SKKTEYAVTMQQYNMELANGNKTTGDDE 117
>AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | high mobility group B4
| chr2:7642486-7643468 REVERSE LENGTH=138
Length = 138
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D N+PK+PP+AFF FLEDFRKEF + NP+ K++ +GK+ G +WK MT E+K Y A
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 126 EKRAEFDRAMTEYNKKMESG---EFEDTD 151
++ E+ + + +YN K+ SG E +D+D
Sbjct: 91 SRKTEYIKNVQQYNLKLASGTNREEDDSD 119
>AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | high mobility group B4
| chr2:7642486-7643468 REVERSE LENGTH=138
Length = 138
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D N+PK+PP+AFF FLEDFRKEF + NP+ K++ +GK+ G +WK MT E+K Y A
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 126 EKRAEFDRAMTEYNKKMESG---EFEDTD 151
++ E+ + + +YN K+ SG E +D+D
Sbjct: 91 SRKTEYIKNVQQYNLKLASGTNREEDDSD 119
>AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | high mobility group B4
| chr2:7642486-7643468 REVERSE LENGTH=134
Length = 134
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D N+PK+PP+AFF FLEDFRKEF + NP+ K++ +GK+ G +WK MT E+K Y A
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 126 EKRAEFDRAMTEYNKKMESG---EFEDTD 151
++ E+ + + +YN K+ SG E +D+D
Sbjct: 91 SRKTEYIKNVQQYNLKLASGTNREEDDSD 119
>AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7177282-7178487 FORWARD
LENGTH=143
Length = 143
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 59/84 (70%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+P +AFF F+EDFR+ F+ +NP K++ +GK+ G+KWK+++ EK Y A
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 126 EKRAEFDRAMTEYNKKMESGEFED 149
+++ E+++ + YNKK+E G ED
Sbjct: 94 KRKVEYEKNIKAYNKKLEEGPKED 117
>AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7177282-7178487 FORWARD
LENGTH=144
Length = 144
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 59/84 (70%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+P +AFF F+EDFR+ F+ +NP K++ +GK+ G+KWK+++ EK Y A
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 126 EKRAEFDRAMTEYNKKMESGEFED 149
+++ E+++ + YNKK+E G ED
Sbjct: 94 KRKVEYEKNIKAYNKKLEEGPKED 117
>AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7177282-7178487 FORWARD
LENGTH=142
Length = 142
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 59/84 (70%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+P +AFF F+EDFR+ F+ +NP K++ +GK+ G+KWK+++ EK Y A
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 126 EKRAEFDRAMTEYNKKMESGEFED 149
+++ E+++ + YNKK+E G ED
Sbjct: 94 KRKVEYEKNIKAYNKKLEEGPKED 117
>AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3
| chr1:7179825-7181174 FORWARD LENGTH=141
Length = 141
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+P +AFF F+EDFR ++ ++P K++ +GK+ GEKWK+++ EK Y A
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 126 EKRAEFDRAMTEYNKKMESGEFED 149
+++ E+++ M YNKK+E G ED
Sbjct: 91 KRKVEYEKNMKAYNKKLEEGPKED 114
>AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3
| chr1:7179825-7181170 FORWARD LENGTH=140
Length = 140
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+P +AFF F+EDFR ++ ++P K++ +GK+ GEKWK+++ EK Y A
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 126 EKRAEFDRAMTEYNKKMESGEFED 149
+++ E+++ M YNKK+E G ED
Sbjct: 91 KRKVEYEKNMKAYNKKLEEGPKED 114
>AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3
| chr1:7179825-7181193 FORWARD LENGTH=147
Length = 147
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 54/77 (70%)
Query: 66 DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
D NKPK+P +AFF F+EDFR ++ ++P K++ +GK+ GEKWK+++ EK Y A
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 126 EKRAEFDRAMTEYNKKM 142
+++ E+++ M YNKK+
Sbjct: 91 KRKVEYEKNMKAYNKKL 107
>AT5G23420.1 | Symbols: HMGB6 | high-mobility group box 6 |
chr5:7888712-7890111 REVERSE LENGTH=241
Length = 241
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 67 ANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATE 126
+NKPK+P TAFF F+ DFRK F+ ++ + +D K GEKWK++T EEK Y D A E
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAE 170
Query: 127 KRAEFDRAM 135
+AE+++++
Sbjct: 171 LKAEYNKSL 179