Miyakogusa Predicted Gene

Lj4g3v0279760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0279760.1 Non Chatacterized Hit- tr|I1K320|I1K320_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8628
PE=,54.05,0.0000000000003,seg,NULL,CUFF.46758.1
         (80 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06475.1 | Symbols:  | unknown protein; Has 35333 Blast hits ...    50   4e-07
AT5G46295.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    46   4e-06

>AT1G06475.1 | Symbols:  | unknown protein; Has 35333 Blast hits
          to 34131 proteins in 2444 species: Archae - 798;
          Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
          531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
          BLink). | chr1:1973992-1974273 REVERSE LENGTH=93
          Length = 93

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 37 KWKRLRALQVS-FTDNVVFKVLSAFEAIVLVFRACFFYLCCGCN 79
          KWKR+  + ++   D VV+KV+   EA VLV   CFFYLCCGC+
Sbjct: 49 KWKRVEIIMLTEIVDGVVYKVMYVVEAFVLVSTLCFFYLCCGCH 92


>AT5G46295.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr5:18779904-18780119 REVERSE LENGTH=71
          Length = 71

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 38 WKRLRALQVSFTDNVVFKVLSAFEAIVLVFRACFFYLCCGCNF 80
          WKRL  L+++F + + ++++S  EA+VLV +  FF+LCCGC F
Sbjct: 30 WKRL-NLKMTFLETLRYRIMSIIEAMVLVSKLAFFFLCCGCKF 71