Miyakogusa Predicted Gene

Lj4g3v0268740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0268740.1 tr|B9I102|B9I102_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_805855 PE=4
SV=1,36.52,0.000000000000008,seg,NULL,CUFF.46790.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29950.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    74   3e-14
AT1G29950.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    74   3e-14

>AT1G29950.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:10493461-10494216 FORWARD
           LENGTH=251
          Length = 251

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 9/110 (8%)

Query: 22  DTCIHAPLAS--AFDAVLPPGVRQITPSERFKLQPSVICPKNFVICDQTRQQGRILVHPS 79
           D  +H P AS  ++DA+ PP  +   P    +LQPS +CPKNFVI DQT  + +++ HP 
Sbjct: 15  DRNMHNPYASGSSYDALFPPCAK--LPYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHPE 72

Query: 80  MTSKF-NSHGLMVHATCTQD----LEKNKINQMEREFSSSFEEDPDDIDA 124
           +T K  N+  L   A+  Q+             E+E SSS++EDP++IDA
Sbjct: 73  LTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDA 122


>AT1G29950.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:10493461-10494216 FORWARD
           LENGTH=251
          Length = 251

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 9/110 (8%)

Query: 22  DTCIHAPLAS--AFDAVLPPGVRQITPSERFKLQPSVICPKNFVICDQTRQQGRILVHPS 79
           D  +H P AS  ++DA+ PP  +   P    +LQPS +CPKNFVI DQT  + +++ HP 
Sbjct: 15  DRNMHNPYASGSSYDALFPPCAK--LPYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHPE 72

Query: 80  MTSKF-NSHGLMVHATCTQD----LEKNKINQMEREFSSSFEEDPDDIDA 124
           +T K  N+  L   A+  Q+             E+E SSS++EDP++IDA
Sbjct: 73  LTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDA 122