Miyakogusa Predicted Gene

Lj4g3v0268700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0268700.1 Non Chatacterized Hit- tr|I3SP22|I3SP22_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,80.39,0.00000000000002,DUF1084,Domain of unknown function DUF1084;
seg,NULL,CUFF.46761.1
         (355 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59090.3 | Symbols:  | LOCATED IN: endomembrane system; EXPRE...   263   1e-70
AT3G59090.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of...   261   4e-70
AT3G59090.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of...   252   4e-67

>AT3G59090.3 | Symbols:  | LOCATED IN: endomembrane system;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1084 (InterPro:IPR009457); BEST
           Arabidopsis thaliana protein match is: tobamovirus
           multiplication 1 (TAIR:AT4G21790.1); Has 35333 Blast
           hits to 34131 proteins in 2444 species: Archae - 798;
           Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
           531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
           BLink). | chr3:21839380-21842348 FORWARD LENGTH=361
          Length = 361

 Score =  263 bits (673), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/328 (42%), Positives = 200/328 (60%), Gaps = 6/328 (1%)

Query: 34  FQLLRIHKRNSHHGWTRQKVFHLLIGSSNWGYFIYLALTLVAACKGWTCWSHSCGFIFMA 93
           FQL R H+RN   GWTRQKV HL+I SSN G  IY    ++A C  W  WS++ GF+ MA
Sbjct: 34  FQLSRFHRRNKQVGWTRQKVLHLMIASSNTGSVIYFVAAVIATCTRWHHWSNALGFLLMA 93

Query: 94  FPKVIXXXXXXXXXSFWVDLCHQPNDDDDYEGSFS---EELLLEKPSNIANLANMERHRK 150
           FPK++         SFWVD+CHQ N ++D +       +++LLEK  +    +N    RK
Sbjct: 94  FPKILFLATFLLLLSFWVDVCHQGNGEEDDDDDEENSIQQVLLEKSKSKPGSSNASDRRK 153

Query: 151 WFPVRFSRFGNRQKIVILVTLLVFITMMAFAVIIWIGLGKNPIDSEAATRVYLDLSAIGM 210
                    G RQK V+   +LVFI M++FA++IWI  GKNP++S     VY+D+ A  +
Sbjct: 154 CCSFHGIHVGTRQKFVVAAIILVFILMISFAILIWIASGKNPMNSSLLAEVYVDIFAAII 213

Query: 211 LFLAGALACYGILLCVKMSKVRAEKPSSEMWKVAGLTIVSVLCFTSSSCVELLTDIPMLY 270
           L   G +  YG+ L   + KVR+E+ SSEM KV+GL  VSV+CFT SS + LLT IP+ Y
Sbjct: 214 LITGGGICFYGLRLLFNLRKVRSEQVSSEMRKVSGLAGVSVVCFTVSSLIALLTHIPLFY 273

Query: 271 HWHQRQFNDVYTSLLLILYYFVGSSMPSAVILWVMRELPAVEARDVLEESSTLAFVANSS 330
           HW+  + + +   +LLI+YYF+GS++P A +LWV+RELP        E++  + +V   +
Sbjct: 274 HWNPSKLHGIKALVLLIIYYFIGSTVPLAFVLWVLRELPPQNIVSRQEDTRRITYVNYET 333

Query: 331 V--AIHHPQR-WTAATSAQNQTSRASPI 355
           V      PQ+ W +AT ++NQ S+ASPI
Sbjct: 334 VPRQPQGPQQDWASATVSKNQVSKASPI 361


>AT3G59090.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1084 (InterPro:IPR009457); BEST
           Arabidopsis thaliana protein match is: tobamovirus
           multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits
           to 195 proteins in 29 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other
           Eukaryotes - 6 (source: NCBI BLink). |
           chr3:21839334-21842348 FORWARD LENGTH=367
          Length = 367

 Score =  261 bits (668), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/329 (42%), Positives = 197/329 (59%), Gaps = 8/329 (2%)

Query: 34  FQLLRIHKRNSHHGWTRQKVFHLLIGSSNWGYFIYLALTLVAACKGWTCWSHSCGFIFMA 93
            QL R H+RN   GWTRQKV HL+I SSN G  IY    ++A C  W  WS++ GF+ MA
Sbjct: 40  LQLSRFHRRNKQVGWTRQKVLHLMIASSNTGSVIYFVAAVIATCTRWHHWSNALGFLLMA 99

Query: 94  FPKVIXXXXXXXXXSFWVDLCHQPNDDDDYEGSFS---EELLLEKPSNIANLANMERHRK 150
           FPK++         SFWVD+CHQ N ++D +       +++LLEK  +    +N    RK
Sbjct: 100 FPKILFLATFLLLLSFWVDVCHQGNGEEDDDDDEENSIQQVLLEKSKSKPGSSNASDRRK 159

Query: 151 WFPVRFSRFGNRQKIVILVTLLVFITMMAFAVIIWIGLGKNPIDSEAATRVYLDLSAIGM 210
                    G RQK V+   +LVFI M++FA++IWI  GKNP++S     VY+D+ A  +
Sbjct: 160 CCSFHGIHVGTRQKFVVAAIILVFILMISFAILIWIASGKNPMNSSLLAEVYVDIFAAII 219

Query: 211 LFLAGALACYGILLCVKMSKVRAEKPSSEMWKVAGLTIVSVLCFTSSSCVELLTDIPMLY 270
           L   G +  YG+ L   + KVR+E+ SSEM KV+GL  VSV+CFT SS + LLT IP+ Y
Sbjct: 220 LITGGGICFYGLRLLFNLRKVRSEQVSSEMRKVSGLAGVSVVCFTVSSLIALLTHIPLFY 279

Query: 271 HWHQRQFNDVYTSLLLILYYFVGSSMPSAVILWVMRELPAVEARDVLEESSTLAFVANSS 330
           HW+  + + +   +LLI+YYF+GS++P A +LWV+RELP        E++  + +V N  
Sbjct: 280 HWNPSKLHGIKALVLLIIYYFIGSTVPLAFVLWVLRELPPQNIVSRQEDTRRITYV-NYE 338

Query: 331 VAIHHP----QRWTAATSAQNQTSRASPI 355
                P    Q W +AT ++NQ S+ASPI
Sbjct: 339 TVPRQPQGPQQDWASATVSKNQVSKASPI 367


>AT3G59090.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1084 (InterPro:IPR009457); BEST
           Arabidopsis thaliana protein match is: tobamovirus
           multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits
           to 197 proteins in 29 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other
           Eukaryotes - 6 (source: NCBI BLink). |
           chr3:21839334-21842449 FORWARD LENGTH=373
          Length = 373

 Score =  252 bits (643), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 135/322 (41%), Positives = 191/322 (59%), Gaps = 8/322 (2%)

Query: 34  FQLLRIHKRNSHHGWTRQKVFHLLIGSSNWGYFIYLALTLVAACKGWTCWSHSCGFIFMA 93
            QL R H+RN   GWTRQKV HL+I SSN G  IY    ++A C  W  WS++ GF+ MA
Sbjct: 40  LQLSRFHRRNKQVGWTRQKVLHLMIASSNTGSVIYFVAAVIATCTRWHHWSNALGFLLMA 99

Query: 94  FPKVIXXXXXXXXXSFWVDLCHQPNDDDDYEGSFS---EELLLEKPSNIANLANMERHRK 150
           FPK++         SFWVD+CHQ N ++D +       +++LLEK  +    +N    RK
Sbjct: 100 FPKILFLATFLLLLSFWVDVCHQGNGEEDDDDDEENSIQQVLLEKSKSKPGSSNASDRRK 159

Query: 151 WFPVRFSRFGNRQKIVILVTLLVFITMMAFAVIIWIGLGKNPIDSEAATRVYLDLSAIGM 210
                    G RQK V+   +LVFI M++FA++IWI  GKNP++S     VY+D+ A  +
Sbjct: 160 CCSFHGIHVGTRQKFVVAAIILVFILMISFAILIWIASGKNPMNSSLLAEVYVDIFAAII 219

Query: 211 LFLAGALACYGILLCVKMSKVRAEKPSSEMWKVAGLTIVSVLCFTSSSCVELLTDIPMLY 270
           L   G +  YG+ L   + KVR+E+ SSEM KV+GL  VSV+CFT SS + LLT IP+ Y
Sbjct: 220 LITGGGICFYGLRLLFNLRKVRSEQVSSEMRKVSGLAGVSVVCFTVSSLIALLTHIPLFY 279

Query: 271 HWHQRQFNDVYTSLLLILYYFVGSSMPSAVILWVMRELPAVEARDVLEESSTLAFVANSS 330
           HW+  + + +   +LLI+YYF+GS++P A +LWV+RELP        E++  + +V N  
Sbjct: 280 HWNPSKLHGIKALVLLIIYYFIGSTVPLAFVLWVLRELPPQNIVSRQEDTRRITYV-NYE 338

Query: 331 VAIHHP----QRWTAATSAQNQ 348
                P    Q W +AT ++NQ
Sbjct: 339 TVPRQPQGPQQDWASATVSKNQ 360