Miyakogusa Predicted Gene

Lj4g3v0258610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0258610.1 tr|A9RPM8|A9RPM8_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,44.83,0.000000000000003,HYPOTHETICAL MEMBRANE PROTEIN,NULL;
FAMILY NOT NAMED,NULL; Cytochrom_B561,Cytochrome b561,
eukaryote,CUFF.46755.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18260.1 | Symbols:  | Cytochrome b561/ferric reductase trans...   190   4e-49
AT2G30890.1 | Symbols:  | Cytochrome b561/ferric reductase trans...   146   8e-36
AT4G17280.1 | Symbols:  | Auxin-responsive family protein | chr4...    68   4e-12
AT5G35735.1 | Symbols:  | Auxin-responsive family protein | chr5...    62   2e-10
AT5G47530.1 | Symbols:  | Auxin-responsive family protein | chr5...    62   2e-10
AT3G25290.2 | Symbols:  | Auxin-responsive family protein | chr3...    61   4e-10
AT3G25290.1 | Symbols:  | Auxin-responsive family protein | chr3...    61   4e-10
AT2G04850.1 | Symbols:  | Auxin-responsive family protein | chr2...    59   2e-09
AT4G12980.1 | Symbols:  | Auxin-responsive family protein | chr4...    58   3e-09
AT5G54830.1 | Symbols:  | DOMON domain-containing protein / dopa...    52   2e-07
AT3G59070.1 | Symbols:  | Cytochrome b561/ferric reductase trans...    49   2e-06
AT3G61750.1 | Symbols:  | Cytochrome b561/ferric reductase trans...    48   5e-06

>AT4G18260.1 | Symbols:  | Cytochrome b561/ferric reductase
           transmembrane protein family | chr4:10093524-10097337
           REVERSE LENGTH=545
          Length = 545

 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 127/190 (66%), Gaps = 10/190 (5%)

Query: 5   CRRVYFVMVS--FYI-SVLPFTECTAFE-------EVXXXXXXXXXXXXXXHQKTSDIAV 54
            + ++ VM+S  FY+ S  PF  C++ E                       HQ  + I +
Sbjct: 4   SKSLWSVMISILFYLTSAPPFVICSSLEVTIDNHSPSNLKTKGSLEQDKLSHQMINSIKL 63

Query: 55  HGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMSLK 114
           HG+LLW SMGFLMP+GIL IR +NKA     + +V FYLHV+FQ+L+V+LAT+GA +SL+
Sbjct: 64  HGILLWVSMGFLMPVGILFIRMANKAHENGIKVKVFFYLHVIFQILAVVLATIGAILSLR 123

Query: 115 KFENSFDNNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLVGIIN 174
             ENSFDNNHQRLGLALYAA+  Q   G F+P RG K R  W+L+HWILGTIVS+VGI+N
Sbjct: 124 TLENSFDNNHQRLGLALYAAMWLQFLTGVFKPSRGSKRRLRWFLLHWILGTIVSIVGIVN 183

Query: 175 IYTGLKAYHQ 184
           IYTG++AY +
Sbjct: 184 IYTGIQAYQK 193


>AT2G30890.1 | Symbols:  | Cytochrome b561/ferric reductase
           transmembrane protein family | chr2:13147774-13149663
           FORWARD LENGTH=257
          Length = 257

 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 95/132 (71%)

Query: 51  DIAVHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAA 110
           +I VHG +LWA+MG LMP+GI++IR  +  +      R LF+LHV  QM++V+L T+GA 
Sbjct: 52  EIKVHGFMLWAAMGVLMPIGIISIRLMSIKDQPIITLRRLFFLHVTSQMVAVILVTIGAV 111

Query: 111 MSLKKFENSFDNNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLV 170
           MS+  F NSF N+HQ+LG+ LY  +  QA +GF RP R +K R  W++ HWILGT ++++
Sbjct: 112 MSVINFNNSFSNHHQQLGIGLYVIVWFQALLGFLRPPREEKARRKWFVGHWILGTSIAIL 171

Query: 171 GIINIYTGLKAY 182
           GIINIYTGL AY
Sbjct: 172 GIINIYTGLHAY 183


>AT4G17280.1 | Symbols:  | Auxin-responsive family protein |
           chr4:9678887-9680277 REVERSE LENGTH=402
          Length = 402

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 12/132 (9%)

Query: 54  VHGLLLWASMGFLMPLGILT---IRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAA 110
           +HG+L   S G +MPLG +    +R +  A+P        FY+HV  Q  + ++   G A
Sbjct: 218 IHGILNGVSWGIMMPLGAIIARYLRVAKSADPA------WFYIHVFCQASAYIIGVAGWA 271

Query: 111 MSLKKFENSFD---NNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIV 167
             LK   +S     + H+ +G+AL++    Q F  F RP    K R YW + H  +G  +
Sbjct: 272 TGLKLGGDSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYWNIYHHTIGYTI 331

Query: 168 SLVGIINIYTGL 179
            ++G++N++ GL
Sbjct: 332 IILGVVNVFKGL 343


>AT5G35735.1 | Symbols:  | Auxin-responsive family protein |
           chr5:13900913-13902934 REVERSE LENGTH=404
          Length = 404

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 54  VHGLLLWASMGFLMPLGILTIRGSNK-AEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMS 112
            HG+L   S G LMP+G +  R     A+P        FYLH+ FQ+   ++   G A  
Sbjct: 210 THGVLNAVSWGVLMPMGAMMARYMKVFADP------TWFYLHIAFQVSGYVIGVAGWATG 263

Query: 113 LKKFENSFDNN---HQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSL 169
           +K   +S   +   H+ LG+AL+     Q F    RP    K R+YW + H  +G    +
Sbjct: 264 IKLGNDSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTYWNVYHHTVGYTTII 323

Query: 170 VGIINIYTGLK 180
           + I+NI+ G  
Sbjct: 324 LSIVNIFKGFD 334


>AT5G47530.1 | Symbols:  | Auxin-responsive family protein |
           chr5:19281471-19282870 FORWARD LENGTH=395
          Length = 395

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 12/133 (9%)

Query: 54  VHGLLLWASMGFLMPLGILTIR---GSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAA 110
           +HG+L   S G +MP+G +  R    S  A+P        FYLHV  Q  + ++   G A
Sbjct: 210 IHGILNGVSWGIMMPIGAIIARYLKVSKSADP------AWFYLHVFCQSSAYIIGVAGWA 263

Query: 111 MSLKKFENSFDNN---HQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIV 167
             LK    S       H+ +G+AL+     Q F  F RP    K R YW + H  +G  V
Sbjct: 264 TGLKLGNESAGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSV 323

Query: 168 SLVGIINIYTGLK 180
            ++ ++N++ GL 
Sbjct: 324 IILAVVNVFKGLD 336


>AT3G25290.2 | Symbols:  | Auxin-responsive family protein |
           chr3:9208955-9210353 FORWARD LENGTH=393
          Length = 393

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 46  HQKTSDIAVHGLLLWASMGFLMPLGILT---IRGSNKAEPGSRRGRVLFYLHVVFQMLSV 102
           + K  +  +HG+L   S G L P+G +    +R  + A+P        FYLHV  Q  + 
Sbjct: 211 NAKIKNRNIHGILNAVSWGILFPIGAIIARYMRVFDSADP------AWFYLHVSCQFSAY 264

Query: 103 LLATVGAAMSLKKFENSFD---NNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLI 159
           ++   G A  LK    S     + H+ +G+AL+     Q F    RP +  K R YW + 
Sbjct: 265 VIGVAGWATGLKLGNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWNIY 324

Query: 160 HWILGTIVSLVGIINIYTGLK 180
           H  +G  +  +GIIN++ GL 
Sbjct: 325 HHGVGYAILTLGIINVFKGLN 345


>AT3G25290.1 | Symbols:  | Auxin-responsive family protein |
           chr3:9208955-9210353 FORWARD LENGTH=393
          Length = 393

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 46  HQKTSDIAVHGLLLWASMGFLMPLGILT---IRGSNKAEPGSRRGRVLFYLHVVFQMLSV 102
           + K  +  +HG+L   S G L P+G +    +R  + A+P        FYLHV  Q  + 
Sbjct: 211 NAKIKNRNIHGILNAVSWGILFPIGAIIARYMRVFDSADP------AWFYLHVSCQFSAY 264

Query: 103 LLATVGAAMSLKKFENSFD---NNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLI 159
           ++   G A  LK    S     + H+ +G+AL+     Q F    RP +  K R YW + 
Sbjct: 265 VIGVAGWATGLKLGNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWNIY 324

Query: 160 HWILGTIVSLVGIINIYTGLK 180
           H  +G  +  +GIIN++ GL 
Sbjct: 325 HHGVGYAILTLGIINVFKGLN 345


>AT2G04850.1 | Symbols:  | Auxin-responsive family protein |
           chr2:1704298-1705608 FORWARD LENGTH=404
          Length = 404

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 54  VHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMSL 113
            HG++   S GFL+P G +T R   + +     G   FY+H   Q+   LL T+G ++ +
Sbjct: 218 THGVVNAISWGFLLPAGAVTARYLRQMQ---SIGPTWFYIHAAIQLTGFLLGTIGFSIGI 274

Query: 114 KKFENSFDNN---HQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLV 170
               NS       H+ LG+A + A   Q     FRP    K R YW   H  +G    ++
Sbjct: 275 VLGHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVVM 334

Query: 171 GIINIYTGLK 180
           G++N++ G +
Sbjct: 335 GVVNVFQGFE 344


>AT4G12980.1 | Symbols:  | Auxin-responsive family protein |
           chr4:7589670-7591074 REVERSE LENGTH=394
          Length = 394

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)

Query: 54  VHGLLLWASMGFLMPLGILT---IRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAA 110
           +HG+L   S G L P+G +    +R    A+P        FYLHV  Q  + ++   G A
Sbjct: 220 IHGILNAVSWGLLFPIGAMIARYMRIFESADPA------WFYLHVSCQFSAYVIGVAGWA 273

Query: 111 MSLKKFENSFD---NNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIV 167
             LK    S     N H+ +G+ L++    Q F    RP +  K R  W + H  +G  +
Sbjct: 274 TGLKLGSESKGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSI 333

Query: 168 SLVGIINIYTGL 179
            ++GIIN++ GL
Sbjct: 334 LILGIINVFKGL 345


>AT5G54830.1 | Symbols:  | DOMON domain-containing protein /
           dopamine beta-monooxygenase N-terminal domain-containing
           protein | chr5:22273394-22276117 FORWARD LENGTH=907
          Length = 907

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 16/138 (11%)

Query: 52  IAVHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQ---MLSVLLATVG 108
           + VHG +++ + G L+P GIL+ R          +G   F +H+  Q   +  V L  + 
Sbjct: 686 LGVHGFMMFLAWGILLPGGILSARYLKHI-----KGDGWFKIHMYLQCSGLAIVFLGLLF 740

Query: 109 AAMSLKKFENSFDNNHQRLGLALYAAILAQAFIGFFRPHRGKK------ERSYWYLIHWI 162
           A   L  F  SF + H + G        AQ    + RP +  +      +R  W   H I
Sbjct: 741 AVAELNGF--SFSSTHVKFGFTAIVLACAQPVNAWLRPAKPAQGELISSKRLIWEYSHSI 798

Query: 163 LGTIVSLVGIINIYTGLK 180
           +G    +VG++ ++TG+K
Sbjct: 799 VGQSAVVVGVVALFTGMK 816


>AT3G59070.1 | Symbols:  | Cytochrome b561/ferric reductase
           transmembrane with DOMON related domain |
           chr3:21832364-21834514 REVERSE LENGTH=466
          Length = 466

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 54  VHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQM---LSVLLATVGAA 110
           +H ++   S G LMP+G++  R     E         FY+HVV Q     S L+  +G A
Sbjct: 219 IHAIVNALSWGILMPIGVMAARYMKNYE---VLDPTWFYIHVVCQTTGYFSGLIGGLGTA 275

Query: 111 MSLKKFENSFDNNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLV 170
           + + +        H  +GL L+A    Q      RP++  K R YW   H  +G IV ++
Sbjct: 276 IYMARHTGMRTTLHTVIGLLLFALGFLQILSLKARPNKDHKYRKYWNWYHHTMGYIVIVL 335

Query: 171 GIINIYTGL 179
            I NIY GL
Sbjct: 336 SIYNIYKGL 344


>AT3G61750.1 | Symbols:  | Cytochrome b561/ferric reductase
           transmembrane with DOMON related domain |
           chr3:22857897-22859254 REVERSE LENGTH=398
          Length = 398

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 55  HGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMSLK 114
           HG++     GFL+P+G +  R     +P      + +YLH+ FQ    +       + ++
Sbjct: 220 HGVMAILGWGFLLPVGAILARYLRHKDP------LWYYLHIGFQFTGFIFGLAAVILGIQ 273

Query: 115 KFENSFDNNHQRLGLALYAAILA--QAFIGFFRPHRGKKERSYWYLIHWILGTIVSLVGI 172
            +     +     G+ ++  +L+  Q    F RP +  K R YW   H  +G I    G 
Sbjct: 274 LYNRIQPDIPAHRGIGIFLLVLSTLQVLAFFARPQKETKMRRYWNWYHHWIGRISLFFGA 333

Query: 173 INIYTGLK 180
           +NI  G++
Sbjct: 334 VNIVLGIR 341