Miyakogusa Predicted Gene

Lj4g3v0258600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0258600.1 Non Chatacterized Hit- tr|I3SUQ0|I3SUQ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98,0,RIBOSOMAL_S11,Ribosomal S11, conserved site; 40S RIBOSOMAL
PROTEIN S14,NULL; 40S RIBOSOMAL PROTEIN S,CUFF.46802.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52580.1 | Symbols:  | Ribosomal protein S11 family protein |...   230   2e-61
AT3G11510.1 | Symbols:  | Ribosomal protein S11 family protein |...   228   1e-60
AT2G36160.1 | Symbols:  | Ribosomal protein S11 family protein |...   228   1e-60
ATCG00750.1 | Symbols: RPS11 | ribosomal protein S11 | chrC:7896...    50   6e-07

>AT3G52580.1 | Symbols:  | Ribosomal protein S11 family protein |
           chr3:19503324-19504701 FORWARD LENGTH=150
          Length = 150

 Score =  230 bits (587), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 121/139 (87%)

Query: 1   MSKRKVREPKEDNVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSKRK +EPK +NVTLGPAVR+GE VFGV  +FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRAXXXXXXXXXXXXAQAALRALAR 120
           VKADRDESSPYAAMLAAQDVA RCKELGITA+H++LRA            AQ+ALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMKIGRIEDVTPIPSDST 139
           SGMKIGRIEDVTPIP+DST
Sbjct: 121 SGMKIGRIEDVTPIPTDST 139


>AT3G11510.1 | Symbols:  | Ribosomal protein S11 family protein |
           chr3:3623757-3624866 REVERSE LENGTH=150
          Length = 150

 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/139 (79%), Positives = 120/139 (86%)

Query: 1   MSKRKVREPKEDNVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSKRK +EPK + VTLGP+VR+GE VFGV  IFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRAXXXXXXXXXXXXAQAALRALAR 120
           VKADRDESSPYAAMLAAQDVA RCKELGITA+H++LRA            AQ+ALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMKIGRIEDVTPIPSDST 139
           SGMKIGRIEDVTPIP+DST
Sbjct: 121 SGMKIGRIEDVTPIPTDST 139


>AT2G36160.1 | Symbols:  | Ribosomal protein S11 family protein |
           chr2:15169925-15171159 FORWARD LENGTH=150
          Length = 150

 Score =  228 bits (580), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 120/139 (86%)

Query: 1   MSKRKVREPKEDNVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSKRK +EPK D VTLGP+VR+GE VFGV  IFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRAXXXXXXXXXXXXAQAALRALAR 120
           VKADRDESSPYAAMLAAQDVA RCKELGITA+H++LRA            AQ+ALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMKIGRIEDVTPIPSDST 139
           SGMKIGRIEDVTPIP+DST
Sbjct: 121 SGMKIGRIEDVTPIPTDST 139


>ATCG00750.1 | Symbols: RPS11 | ribosomal protein S11 |
           chrC:78960-79376 REVERSE LENGTH=138
          Length = 138

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 28  GVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKEL 87
           GV  + ASFN+T + VTD+ GR       G    +  R   +P+AA  AA +      + 
Sbjct: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQ 86

Query: 88  GITALHIRLRAXXXXXXXXXXXXAQAALRALARSGMKIGRIEDVTPIPSD 137
           G+    +R++               AALRA+ RSG+ +  + DVTP+P +
Sbjct: 87  GMQRAEVRIKGPGLGR--------DAALRAIRRSGILLSFVRDVTPMPHN 128