Miyakogusa Predicted Gene

Lj4g3v0244130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0244130.1 tr|Q1I184|Q1I184_PEA WD-40 repeat protein
OS=Pisum sativum GN=MSI1 PE=2 SV=1,94.69,0,WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; WD40 repeats,WD40
repeat;,CUFF.46754.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 rep...   392   e-109
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fam...   208   2e-54
AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein / ...   202   1e-52
AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Tr...    92   3e-19
AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembl...    86   2e-17
AT2G19540.1 | Symbols:  | Transducin family protein / WD-40 repe...    59   3e-09

>AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40
           repeat-like superfamily protein | chr5:23556112-23557994
           FORWARD LENGTH=424
          Length = 424

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 202/226 (89%), Gaps = 4/226 (1%)

Query: 1   MGKXXXXXXXXXXXRLINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKD 60
           MGK           RLINEEYKIWKKN+PFLYDLVITHALEWPSLTVEWLPDR EP GKD
Sbjct: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query: 61  YSLQKVILGTHTSENEPNYLMLAQVQLPLHDSENDARHYDDD---LGGFGCANGKVQIIQ 117
           YS+QK+ILGTHTSE+EPNYLMLAQVQLPL D+E++AR YDDD    GGFGCA GKVQIIQ
Sbjct: 61  YSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQ 120

Query: 118 QINHDGEVNRARYMPQNPFIIATKTISAEVYVFDYSKHPSKPPLDGSCNPDLRLRGHNTE 177
           QINHDGEVNRARYMPQNPFIIATKT++AEVYVFDYSKHPSKPPLDG+CNPDL+LRGH++E
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSE 180

Query: 178 GYGLSWSKFKEGHLLSGSDDAQICLWDINGGTPKNKSLDAMQIFKV 223
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN  TPKNKSLDA QIFK 
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDIN-ATPKNKSLDAQQIFKA 225


>AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family
           protein / WD-40 repeat family protein |
           chr2:7281615-7283583 REVERSE LENGTH=415
          Length = 415

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 144/213 (67%), Gaps = 19/213 (8%)

Query: 17  INEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKD--YSLQKVILGTHTSE 74
           + E++ +WKKN+PFLYDL+I+H LEWPSLTV W+P    P   D  + + K+ILGTHTS 
Sbjct: 14  VEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSG 73

Query: 75  NEPNYLMLAQVQLPLHDSENDARHYDDDLGGFGCANG-----KVQIIQQINHDGEVNRAR 129
           +  ++LM+A V  P  ++E           G G AN      KV+I Q+I  DGEVNRAR
Sbjct: 74  SAQDFLMVADVVTPTPNAE----------PGIGGANQDPFIPKVEIRQRIRVDGEVNRAR 123

Query: 130 YMPQNPFIIATKTISAEVYVFDYSKHPSKPPLDGSCNPDLRLRGHNTEGYGLSWSKFKEG 189
            MPQ P ++  KT   EV++FDY+KH +K      C+PDLRL GH+ EGYGLSWS FKEG
Sbjct: 124 CMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQT-SECDPDLRLVGHDKEGYGLSWSPFKEG 182

Query: 190 HLLSGSDDAQICLWDINGGTPKNKSLDAMQIFK 222
           +LLSGS D +ICLWD++  TP++K L+AM +++
Sbjct: 183 YLLSGSQDQKICLWDVS-ATPQDKVLNAMFVYE 214


>AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein /
           WD-40 repeat family protein | chr4:16682752-16684751
           REVERSE LENGTH=424
          Length = 424

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 140/208 (67%), Gaps = 9/208 (4%)

Query: 17  INEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKD--YSLQKVILGTHTSE 74
           + EE+ IWK+N+PFLYDL+I+H LEWPSLT+ W+P    P  KD  +++ K+ILGTHTS 
Sbjct: 15  VEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPYFAVHKLILGTHTSG 74

Query: 75  NEPNYLMLAQVQLPLHDSENDARHYDDDLGGFGCANGKVQIIQQINHDGEVNRARYMPQN 134
              ++LM+A V +P  D+E      D +         KV+I Q+I  DGEVNRAR MPQ 
Sbjct: 75  GAQDFLMVADVVIPTPDAEPGLGGRDQE-----PIVPKVEIKQKIRVDGEVNRARCMPQK 129

Query: 135 PFIIATKTISAEVYVFDYSKHPSKPPLDGSCNPDLRLRGHNTEGYGLSWSKFKEGHLLSG 194
           P ++  KT  +EV++FDY++   KP     C+PDLRL GH  EGYGL+WS FKEG+LLSG
Sbjct: 130 PTLVGAKTSGSEVFLFDYARLSGKPQT-SECDPDLRLMGHEQEGYGLAWSSFKEGYLLSG 188

Query: 195 SDDAQICLWDINGGTPKNKSLDAMQIFK 222
           S D +ICLWD++  T  +K L+ M +++
Sbjct: 189 SQDQRICLWDVS-ATATDKVLNPMHVYE 215


>AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 |
           Transducin family protein / WD-40 repeat family protein
           | chr2:8456006-8459235 FORWARD LENGTH=507
          Length = 507

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 15/195 (7%)

Query: 17  INEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKDYSLQKVILGTHTSENE 76
           ++E+Y  WK   P LYD +  H L WPSL+  W P   +   K+   Q++ L   T  + 
Sbjct: 64  VDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSV 121

Query: 77  PNYLMLAQVQL---PLHDSENDARHYDDDLGGFGCANGKVQIIQQINHDGEVNRARYMPQ 133
           PN L++A  ++    +  +E+ ++  ++    F      V+  + I H GEVNR R +PQ
Sbjct: 122 PNTLVIANCEVVKPRVAAAEHISQFNEEARSPF------VKKYKTIIHPGEVNRIRELPQ 175

Query: 134 NPFIIATKTISAEVYVFDYSKHPSKPPLDGSCN--PDLRLRGHNTEG-YGLSWSKFKEGH 190
           N  I+AT T S +V ++D    P++  + G+ N  PDL L GH     + L+     E  
Sbjct: 176 NSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCP-TEPF 234

Query: 191 LLSGSDDAQICLWDI 205
           +LSG  D  + LW I
Sbjct: 235 VLSGGKDKSVVLWSI 249


>AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly
           factor group C5 | chr4:14559255-14562522 REVERSE
           LENGTH=487
          Length = 487

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 19/192 (9%)

Query: 17  INEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKDYSLQKVILGTHTSENE 76
           +++ Y  WK   P LYD  + H L WPSL+  W P   +   K    Q++ L   T+ + 
Sbjct: 54  VDDTYSQWKTLLPILYDSFVNHTLVWPSLSCRWGPQLEQAGSK---TQRLYLSEQTNGSV 110

Query: 77  PNYLMLAQVQLPLHDSENDARHYDDDLGGFGCANGKVQIIQQINHDGEVNRARYMPQNPF 136
           PN L++A  +  ++   N+  H           +  V+  + I H GEVNR R +PQN  
Sbjct: 111 PNTLVIANCET-VNRQLNEKAH-----------SPFVKKYKTIIHPGEVNRIRELPQNSK 158

Query: 137 IIATKTISAEVYVFDYSKHPSKPPLDGS--CNPDLRLRGHNTEG-YGLSWSKFKEGHLLS 193
           I+AT T S ++ +++    P +  + G+    PDL L GH  +  + L+     E  +LS
Sbjct: 159 IVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCP-TEPFVLS 217

Query: 194 GSDDAQICLWDI 205
           G  D  + LW+I
Sbjct: 218 GGKDKSVILWNI 229


>AT2G19540.1 | Symbols:  | Transducin family protein / WD-40 repeat
           family protein | chr2:8461804-8464347 FORWARD LENGTH=469
          Length = 469

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 15/107 (14%)

Query: 116 IQQINHDGEVNRARYMPQNPFIIATKTISAEVYVFDYSKH-------------PSKPPLD 162
           ++++ H G VNR R MPQN  I  +   S  V V+D S H              + P L+
Sbjct: 153 VRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAESETEGKDGTSPVLN 212

Query: 163 GSCNPDLRLRGHNTEGYGLSWSKFKEGHLLSGSDDAQICLWDINGGT 209
            +  P +   GH  EGY + WS    G LLSG   + I LW+   G+
Sbjct: 213 QA--PLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPASGS 257