Miyakogusa Predicted Gene
- Lj4g3v0216730.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0216730.1 Non Chatacterized Hit- tr|A9NQT3|A9NQT3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,33.91,0.00000000001,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RRM,RNA
rec,CUFF.46710.1
(147 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 152 1e-37
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 73 7e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 71 2e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 71 2e-13
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 6e-13
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 1e-12
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-11
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 64 4e-11
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 64 5e-11
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 63 5e-11
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 63 6e-11
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 61 2e-10
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 60 4e-10
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 60 4e-10
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 60 4e-10
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 60 4e-10
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 2e-09
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 58 2e-09
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 55 1e-08
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 55 1e-08
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 2e-08
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 54 3e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 3e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 3e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 8e-08
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 52 1e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 52 1e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 52 1e-07
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-07
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 51 2e-07
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 51 2e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 51 3e-07
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 51 3e-07
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 50 4e-07
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-07
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 7e-07
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 7e-07
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 7e-07
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-06
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-06
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-06
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 49 2e-06
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 2e-06
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT1G50300.1 | Symbols: TAF15 | TBP-associated factor 15 | chr1:1... 48 2e-06
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 3e-06
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 3e-06
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 3e-06
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 3e-06
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 3e-06
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 48 3e-06
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 48 3e-06
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 48 3e-06
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 48 3e-06
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 3e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 4e-06
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 4e-06
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 6e-06
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 7e-06
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 105/150 (70%), Gaps = 6/150 (4%)
Query: 4 STLASFPCF---STSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSN 60
S SFP F S+S P+ LR + +YPLASKI+V+NLP+ST E L++EFS
Sbjct: 3 SATLSFPSFVASSSSLPNYRNLRFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSA 62
Query: 61 FGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLGWDD 120
FG+IAEVK++KD KRSKGYAFIQ+T +D A LA+ETMD++ + GR IY++IAK G D
Sbjct: 63 FGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGKRD 122
Query: 121 FDAPIKTSGPPKKWNIPEE---EEVVDCWY 147
F +TSGPP+K + PEE +EV DCWY
Sbjct: 123 FQGLPRTSGPPEKSDEPEEAANDEVADCWY 152
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
++ V+NLPY+ E L + FS FGKI+EV +V D TKRS+G A+I Y + A A+E
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 99 MDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEE 141
+D F GR +++ AK TS PK + EE+
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQ 397
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+K+ VKN+ + + L++ FS FG+I +++ K N + GYAF+++ + A+ A +
Sbjct: 702 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKK 760
Query: 98 TMDQKDFYGRTIYVE 112
+ FYGR + +E
Sbjct: 761 ALASTHFYGRHLVLE 775
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
++SK+ V L + T +++L++ F++FG++ E ++ D T RS+G+ F+ ++C D+A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 96 LETMDQKDFYGRTIYVEIA 114
++ MD K+ GR I V +A
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
++SK+ V L + T +++L++ F++FG++ E ++ D T RS+G+ F+ ++C D+A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 96 LETMDQKDFYGRTIYVEIA 114
++ MD K+ GR I V +A
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
K+ + L + T E TL+ F FG++ EVK++ D +KRSKGYAF++YT +AA AL+
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ K G I V++AK
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
A ++ V LPYST E L + FS FG I+EV +V D +T+ +G AF+ Y ++A +A+
Sbjct: 226 AGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAM 285
Query: 97 ETMDQKDFYGRTIYVEIAK 115
+ +D+ F GRT+++ AK
Sbjct: 286 DKLDKLPFQGRTLHILPAK 304
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+++++ V L T + +L++ FS FG+I E ++++D+ T+R KG+ FI + D A A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 96 LETMDQKDFYGRTIYVEIAK 115
L+++D K GR I+VE+AK
Sbjct: 65 LKSLDGKIVDGRLIFVEVAK 84
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
+SK+ + + YS E +L++ F+ +G++ + +++ D T RS+G+ F+ +T +AA A+
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 97 ETMDQKDFYGRTIYVEIAK 115
+ +D +D +GR + V A
Sbjct: 99 QALDGRDLHGRVVKVNYAN 117
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
+SKI V + YST E L++ FS +G++ + K++ D T RS+G+AF+ +T + A A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 97 ETMDQKDFYGRTIYVEIA 114
+ +D +D +GR I V A
Sbjct: 93 Q-LDGQDLHGRRIRVNYA 109
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 34 YPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAM 93
Y A +I V NLP+ L++ FS GK+ + ++V D T RS+G+ F+Q + +
Sbjct: 203 YDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Query: 94 LALETMDQKDFYGRTIYVEIAK 115
+A+ +D ++ GR I V +A+
Sbjct: 263 VAIAALDGQNLEGRAIKVNVAE 284
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
S + V NL +S + + FS FGK+A V ++KD +T++S+G AF+ Y R+ A A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 98 TMDQKDFYGRTIYVEIA 114
+MD K GR + V IA
Sbjct: 117 SMDAKILNGRKLTVSIA 133
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + LP GE L+ G+I EV+++KD ++ SKGYAF+ + +D A
Sbjct: 93 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 152
Query: 95 ALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVVD 144
A+E + K+F G+TI +++ F I PK W E +V++
Sbjct: 153 AIEELHSKEFKGKTIRCSLSETKNRLFIGNI-----PKNWTEDEFRKVIE 197
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + LP GE L+ G+I EV+++KD ++ SKGYAF+ + +D A
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 95 ALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVVD 144
A+E + K+F G+TI +++ F I PK W E +V++
Sbjct: 173 AIEELHSKEFKGKTIRCSLSETKNRLFIGNI-----PKNWTEDEFRKVIE 217
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + LP GE L+ G+I EV+++KD ++ SKGYAF+ + +D A
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 95 ALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVVD 144
A+E + K+F G+TI +++ F I PK W E +V++
Sbjct: 173 AIEELHSKEFKGKTIRCSLSETKNRLFIGNI-----PKNWTEDEFRKVIE 217
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+K+ V L + T E TL+ F FG + + MV D R KG+AF++Y + AM A++
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 98 TMDQKDFYGRTIYVEIAKLGWD 119
M K GR I+VE AK D
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSD 158
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 18 SLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKR 77
S+ + S+S +ASK+ + L + T E L + FS G++ E ++V D + R
Sbjct: 14 SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDR 73
Query: 78 SKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAK----LGWDDFDAPIKTSGPP 131
SKG+ F+ + D A AL + + GRTI+V+ AK LG PI GPP
Sbjct: 74 SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGG-GYPI-ARGPP 129
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+++K+ + L + T + +L+ F++FG + + K++ D T RS+G+ F+ + AA A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 96 LETMDQKDFYGRTIYVEIAK 115
+ MD K+ GR I V A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+++K+ + L + T + +L+ F++FG + + K++ D T RS+G+ F+ + AA A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 96 LETMDQKDFYGRTIYVEIAK 115
+ MD K+ GR I V A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+++K+ + L + T + +L+ F++FG + + K++ D T RS+G+ F+ + AA A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 96 LETMDQKDFYGRTIYVEIAK 115
+ MD K+ GR I V A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+++K+ + L + T + +L+ F++FG + + K++ D T RS+G+ F+ + AA A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 96 LETMDQKDFYGRTIYVEIAK 115
+ MD K+ GR I V A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
K+ + L +S E +L+ FS+FG++AEV++ D + RS+G+ F+ + A+ A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 99 MDQKDFYGRTIYVEIA 114
MD K GR + + A
Sbjct: 102 MDGKGLLGRPLRISFA 117
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 34 YPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAM 93
Y A ++ V NLP+ L++ FS GK+ E ++V D T RS+G+ F+ + D
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 94 LALETMDQKDFYGRTIYVEIAK 115
A+ +D ++ GR I V +A+
Sbjct: 300 EAISALDGQNLEGRAIRVNVAE 321
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
++V N+ + T L F+ +GK+ +V + +D T S+G+AF++Y +D A A+E +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 100 DQKDFYGRTIYVEIAKLG 117
D + GR I V+ AK G
Sbjct: 78 DGRVVDGREITVQFAKYG 95
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
++V N+ + T L F+ +GK+ +V + +D T S+G+AF++Y +D A A+E +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 100 DQKDFYGRTIYVEIAKLG 117
D + GR I V+ AK G
Sbjct: 78 DGRVVDGREITVQFAKYG 95
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 42 VKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQ 101
VK S E L+K FS FG++ VK++ + T++S GY ++ + ++ A A+E M+
Sbjct: 81 VKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNG 140
Query: 102 KDFYGRTIYVEIAKLG 117
K F GR I V+ + G
Sbjct: 141 KFFDGRFILVKFGQPG 156
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
S+I V L + L++ FS FG I + +++ + +T RS+G+ FI + R A ++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 97 ETMDQKDFYGRTIYVEIA--KLGWDDFDAPIKTSGPPKKWNI 136
M +DF R I V A KLG DD ++ G ++I
Sbjct: 66 REMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSI 107
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+KI V L + T T+++ F FG+I E ++ D NT RSKGY F+ + +AAM A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 98 TMD 100
M+
Sbjct: 82 NMN 84
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T + LQ+ FS FG + + K++ D + RS+G+ F+ + A A+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ K+ GR I V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 24 PSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAF 83
P SS+ Y +++K+ + L T E +L+ FS+F + E +++ + T RS+GY F
Sbjct: 18 PVSSMLGSLRY-MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGF 76
Query: 84 IQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
+ + D+A A+ M+ ++ G I V +AK
Sbjct: 77 VNFISEDSANSAISAMNGQELNGFNISVNVAK 108
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T + LQ+ FS FG + + K++ D + RS+G+ F+ + A A+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ K+ GR I V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T + LQ+ FS FG + + K++ D + RS+G+ F+ + A A+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ K+ GR I V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 33 DYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAA 92
D L S+I V L + E L+ F +GKI E +++ +T R +G+ FI +T R A
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 93 MLALETMDQKDFYGRTIYVEIA--KLGWDDFDAPIKTSGPPKKWNIPEEE 140
A++ M ++ + I V A K+G +D D K G + E+E
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDE 116
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 33 DYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAA 92
D L S+I V L + E L+ F +GKI E +++ +T R +G+ FI +T R A
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 93 MLALETMDQKDFYGRTIYVEIA--KLGWDDFDAPIKTSGPPKKWNIPEEE 140
A++ M ++ + I V A K+G +D D K G + E+E
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDE 116
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 32 PDYP-LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRD 90
P YP K+ V NL ++ +L F G + ++V D +T RS+GY F+ Y+ +
Sbjct: 170 PLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKA 229
Query: 91 AAMLALETMDQKDFYGRTIYVEIAK 115
ALE++D + GR I V +A+
Sbjct: 230 EMETALESLDGFELEGRAIRVNLAQ 254
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+++ V NL + + L+ FS GK+ E +++ D ++ RSKG+ F+ Y A++
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 98 TMDQKDFYGRTIYVEIAK 115
++D D GR I V A+
Sbjct: 264 SLDGADLDGRQIRVSEAE 281
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + LP GE L+ G+I EV+++KD ++ SKGYAF+ + +D A
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 95 ALETMDQKDF 104
A+E + K+F
Sbjct: 173 AIEELHSKEF 182
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 25 SSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFI 84
S S Y ++ + V +P+ E L FS +G+I +V +++D T +SKG+AF+
Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
Query: 85 QYTCRDAAMLALETMDQKDFYGRTIYVE 112
Y + + +LA++ ++ GRTI V+
Sbjct: 83 AYEDQRSTILAVDNLNGALVLGRTIKVD 110
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 58 FSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
FS+FG+I K++KD T SKGY F++Y A A++ M+ F GRT+ V IA
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 58 FSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
FS+FG+I K++KD T SKGY F++Y A A++ M+ F GRT+ V IA
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 58 FSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
FS+FG+I K++KD T SKGY F++Y A A++ M+ F GRT+ V IA
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%)
Query: 11 CFSTSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMV 70
C + S+ S + + S RP ++ + V L T L+ F+ FG++A+ K+V
Sbjct: 29 CSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVV 88
Query: 71 KDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
D + SKG+ F++Y + + + MD K G I+ E A+
Sbjct: 89 TDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYAR 133
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T + L+ F+ +G + + K++ D T RS+G+ F+ + A A+E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ +D GR+I V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T + L+ F+ +G + + K++ D T RS+G+ F+ + A A+E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ +D GR+I V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 26 SSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQ 85
+LS+ P SKI V L ST L++ F +FGKI + +V D + S+G+ F+
Sbjct: 29 GNLSLTP-----SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVT 83
Query: 86 YTCRDAAMLALETMDQKDFYGRTIYVE 112
Y + A A++ M K+ GR I V
Sbjct: 84 YDSIEVANNAMQAMQNKELDGRIIGVH 110
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
+ V L Y + E+ +++EF ++G I V +V D T + KGYAFI+Y A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 100 DQKDFYGRTIYVEIAK 115
D + GR + V++ +
Sbjct: 200 DGQKIDGRRVLVDVER 215
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
S I VKN+ + E L+K FS G I K++ D K SKG+ F+ ++ + A+ A++
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVK 362
Query: 98 TMDQKDFYGRTIYVEIAKLGWD 119
T + F+G+ +YV IA+ D
Sbjct: 363 TFHGQMFHGKPLYVAIAQKKED 384
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
+ VKNLP S LQ F FG I K V +S+GY F+Q+ DAA A++T+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCK-VATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 100 DQKDFYGRTIYV 111
+ + IYV
Sbjct: 173 NSTIVADKEIYV 184
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+ + +KNL E L+++F+ FGKI + + KD N + +GYAF+ + + A A E
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDEN-RLCRGYAFVNFDNPEDARRAAE 259
Query: 98 TMDQKDFYGRTIYVEIAK 115
T++ F + +YV A+
Sbjct: 260 TVNGTKFGSKCLYVGRAQ 277
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 20 VKLRPSSSLSMRPDYPLASKIV-VKN--LPYSTGETTLQKEFSNFGKIAEVKMVKDANTK 76
+++RP SS+S R + V N L T + +L++ F+ F +++KD T+
Sbjct: 50 MRIRPRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQ 104
Query: 77 RSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
R KG+ FI + D A AL+ ++ K GR I+VE AK
Sbjct: 105 RPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
++I V +P S E+ + F +G+I ++ M KD N+K+ +G FI ++ D+ +E
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Query: 98 TMDQKDFYGRTIYVEIAKLGWDD 120
D D G T+ V+ A DD
Sbjct: 151 --DTHDLGGTTVAVDRATPKEDD 171
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
++I V +P S E+ + F +G+I ++ M KD N+K+ +G FI ++ D+ +E
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Query: 98 TMDQKDFYGRTIYVEIAKLGWDD 120
D D G T+ V+ A DD
Sbjct: 151 --DTHDLGGTTVAVDRATPKEDD 171
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
+ + V LPY E +++ FS +G + VK+V D + R K Y F+ ++ R +A A+
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAI 64
Query: 97 ETMDQKDFYGRTIYV 111
E MD K GR + V
Sbjct: 65 EDMDGKSIGGRAVRV 79
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + +P E L+ + G++ EV+++++ ++ KGYAF+ + +D A
Sbjct: 89 PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148
Query: 95 ALETMDQKDFYGRTI 109
A++T++ DF G+ I
Sbjct: 149 AIDTLNNTDFRGKRI 163
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + +P E L+ + G++ EV+++++ ++ KGYAF+ + +D A
Sbjct: 89 PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148
Query: 95 ALETMDQKDFYGRTI 109
A++T++ DF G+ I
Sbjct: 149 AIDTLNNTDFRGKRI 163
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 23 RPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYA 82
+ +SSL P + KI V L S E +K F+ FG I +V ++ D T+R +G+
Sbjct: 113 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 172
Query: 83 FIQYTCRDAAMLALETMDQKDFY---GRTIYVEIA 114
FI Y + A++ + QK F+ G+ + V++A
Sbjct: 173 FISYDSEE----AVDKVLQKTFHELNGKMVEVKLA 203
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P + + VKNLP GE L+K F FG I+ +++D + S+ + F+ + C +AA
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAAS 284
Query: 95 ALETMDQKDFYGRTIYVEIAK 115
A+E M+ +YV A+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQ 305
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+KI V LP+ T L F FG+I K+V D T+RSKG+ F+ + ++A A E
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 98 TMDQKDFYGRTIYVEIAKLG 117
+ GRT+ ++A LG
Sbjct: 69 NPNHT-IDGRTVNCKLAYLG 87
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
I V+ L + T L+ F +G+I E +V D +T R+KG+ F+ + R A AL+
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
Query: 99 MDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVVDCWY 147
+K Y RT+ A+ P SG P++ P E +D +
Sbjct: 224 -PEKRMYNRTVSCLPAR--------PF-NSGKPREQQQPVESVKIDLSH 262
>AT1G50300.1 | Symbols: TAF15 | TBP-associated factor 15 |
chr1:18628818-18631662 REVERSE LENGTH=372
Length = 372
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 34 YPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVK--------MVKDANTKRSKGYAFIQ 85
YP + V NLP T E L F G + K + +D T KG A +
Sbjct: 4 YPTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVT 63
Query: 86 YTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
Y AA+ A+E + KDF+G TI V +A+
Sbjct: 64 YEDPHAALAAVEWFNNKDFHGNTIGVFMAE 93
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 47/80 (58%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+S + VK + +S+ E TL + FS +G++ +V ++ D R KG+A++ ++ ++ A A
Sbjct: 19 FSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKA 78
Query: 96 LETMDQKDFYGRTIYVEIAK 115
L ++ + GR + ++ K
Sbjct: 79 LLELNAQLVDGRVVILDTTK 98
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P+ KI V L + T TL + F +G+I + K V D + +SKGY FI Y R A
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 95 ALETMDQKDFYGRTIYVEIAKLG 117
AL+ QK R ++A G
Sbjct: 197 ALK-QPQKKIGSRMTACQLASKG 218
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P+ KI V L + T TL + F +G+I + K V D + +SKGY FI Y R A
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 95 ALETMDQKDFYGRTIYVEIAKLG 117
AL+ QK R ++A G
Sbjct: 197 ALK-QPQKKIGSRMTACQLASKG 218
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P+ KI V L + T TL + F +G+I + K V D + +SKGY FI Y R A
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 95 ALETMDQKDFYGRTIYVEIAKLG 117
AL+ QK R ++A G
Sbjct: 197 ALK-QPQKKIGSRMTACQLASKG 218
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P+ KI V L + T TL + F +G+I + K V D + +SKGY FI Y R A
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 95 ALETMDQKDFYGRTIYVEIAKLG 117
AL+ QK R ++A G
Sbjct: 197 ALK-QPQKKIGSRMTACQLASKG 218
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P+ KI V L + T TL + F +G+I + K V D + +SKGY FI Y R A
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 95 ALETMDQKDFYGRTIYVEIAKLG 117
AL+ QK R ++A G
Sbjct: 197 ALK-QPQKKIGSRMTACQLASKG 218
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 23 RPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYA 82
+ +SSL P + KI V L S E +K F+ FG I +V ++ D T+R +G+
Sbjct: 91 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 150
Query: 83 FIQYTCRDAAMLALETMDQKDFY---GRTIYVEIA 114
FI Y + A++ + QK F+ G+ + V++A
Sbjct: 151 FISYDSEE----AVDKVLQKTFHELNGKMVEVKLA 181
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 23 RPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYA 82
+ +SSL P + KI V L S E +K F+ FG I +V ++ D T+R +G+
Sbjct: 91 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 150
Query: 83 FIQYTCRDAAMLALETMDQKDFY---GRTIYVEIA 114
FI Y + A++ + QK F+ G+ + V++A
Sbjct: 151 FISYDSEE----AVDKVLQKTFHELNGKMVEVKLA 181
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
KI V LP+ T TL F +G+I E +V D T ++KG+ F+ + R A AL+
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 99 MDQKDFYGRTIYVEIAKLG------WDDFDAPIKTS 128
+K RT ++A +G D P+K S
Sbjct: 165 -PKKRILNRTATCQLASMGPAASGKGHDQPGPVKIS 199
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
A I +KNL S L FS+FG I K+ D+ + +SKGY F+QY ++A A+
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 97 ETMDQKDFYGRTIYV 111
E ++ + +YV
Sbjct: 182 EKLNGMLLNDKQVYV 196
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+K+ V L + T TL++ F +G+I E ++ D NT RSKGY F+ + +AA A
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
KI V LP+ T TL F +G+I E +V D T ++KG+ F+ + R A AL+
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 99 MDQKDFYGRTIYVEIAKLG------WDDFDAPIKTS 128
+K RT ++A +G D P+K S
Sbjct: 165 -PKKRILNRTATCQLASMGPAASGKGHDQPGPVKIS 199
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 28 LSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYT 87
+S P+Y + + L ++T + L+ F +G + E K+V D + RS+G+ FI +
Sbjct: 1 MSEDPEY----RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFD 56
Query: 88 CRDAAMLALETMDQKDFYGRTIYVEIAK 115
+ A A+ M+ D GRTI V+ A+
Sbjct: 57 EKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+K+ V L + T TL++ F +G I E ++ D NT RSKGY F+ T RD
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFV--TFRDPEAARRA 81
Query: 98 TMDQKDFY-GRTIYVEIAKLG 117
+D GR +A LG
Sbjct: 82 CVDPTPIIDGRRANCNLASLG 102
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+K+ V L + T TL++ F +G I E ++ D NT RSKGY F+ T RD
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFV--TFRDPEAARRA 81
Query: 98 TMDQKDFY-GRTIYVEIAKLG 117
+D GR +A LG
Sbjct: 82 CVDPTPIIDGRRANCNLASLG 102
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 23 RPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYA 82
+ +SSL P + KI V L S E +K F+ FG I +V ++ D T+R +G+
Sbjct: 31 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 90
Query: 83 FIQYTCRDAAMLALETMDQKDFY---GRTIYVEIA 114
FI Y + A++ + QK F+ G+ + V++A
Sbjct: 91 FISYDSEE----AVDKVLQKTFHELNGKMVEVKLA 121
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 20 VKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSK 79
V+L S +S R K+ ++ L T L+ FS++G + E ++ D T +SK
Sbjct: 64 VRLTADSDISQR-------KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSK 116
Query: 80 GYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLG 117
GY F+ + D A+LAL+ +K GR ++A G
Sbjct: 117 GYGFVTFMHVDGALLALKEPSKK-IDGRVTVTQLAASG 153
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 20 VKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSK 79
V+L S +S R K+ ++ L T L+ FS++G + E ++ D T +SK
Sbjct: 64 VRLTADSDISQR-------KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSK 116
Query: 80 GYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLG 117
GY F+ + D A+LAL+ +K GR ++A G
Sbjct: 117 GYGFVTFMHVDGALLALKEPSKK-IDGRVTVTQLAASG 153
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
I V+ + T + L+ F ++G+I E +V D +T R KGY F+ + R A AL+
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR- 468
Query: 100 DQKDFYGRTIYVEIA 114
+K Y R + +A
Sbjct: 469 PEKRMYNRIVVCNLA 483
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%)
Query: 12 FSTSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVK 71
+T P + S S++ + P + + + N+P + L F FGK+ K+
Sbjct: 313 LTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFV 372
Query: 72 DANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
D T SK + FI Y + AA A+ TM+ G+ + V++ +
Sbjct: 373 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%)
Query: 12 FSTSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVK 71
+T P + S S++ + P + + + N+P + L F FGK+ K+
Sbjct: 304 LTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFV 363
Query: 72 DANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
D T SK + FI Y + AA A+ TM+ G+ + V++ +
Sbjct: 364 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 42 VKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQ 101
VK S E L+K FS FG++ VK++ + T++S GY ++ + ++ A A+E M+
Sbjct: 62 VKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNG 121
Query: 102 K 102
K
Sbjct: 122 K 122