Miyakogusa Predicted Gene

Lj4g3v0216630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0216630.1 Non Chatacterized Hit- tr|K4CBD0|K4CBD0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,55.43,3e-19,
,CUFF.46702.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35732.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    87   3e-18
AT2G04795.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    76   6e-15

>AT5G35732.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:13897961-13898263 FORWARD LENGTH=100
          Length = 100

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 1   MWHLLAAVTRNLHNTRKSSKVADENMFQQGNTVEMFGHERGRRQHGWGLVLSILQAPMSM 60
           M  +L+ + RNL N RKS +VAD+       +    G     R+ G+  V  I++ P S+
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV--IMRFPFSI 58

Query: 61  LSCVSHPQVNGPDGVWVTGGEFSQISEMNYLMVSDSMRYAILM 103
           +SC + P+V+G DG+WV+G ++  ISE+N+LMVSDSMRYAILM
Sbjct: 59  ISCFAVPRVSGTDGLWVSG-DYGSISEVNHLMVSDSMRYAILM 100


>AT2G04795.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in
           6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:1683027-1683314 FORWARD
           LENGTH=95
          Length = 95

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 8/103 (7%)

Query: 1   MWHLLAAVTRNLHNTRKSSKVADENMFQQGNTVEMFGHERGRRQHGWGLVLSILQAPMSM 60
           M  +L+ + RNL N RKS +VADE+                    G G    I++ P+S+
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDH-------GGGNGSNGGIMKFPLSI 53

Query: 61  LSCVSHPQVNGPDGVWVTGGEFSQISEMNYLMVSDSMRYAILM 103
           +SC S P+V+  DGVWV+G ++ ++SE+N+LMV D MRYA+LM
Sbjct: 54  MSCFSVPRVSRADGVWVSG-DYGRVSEVNHLMVCDGMRYALLM 95