Miyakogusa Predicted Gene

Lj4g3v0200060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0200060.1 Non Chatacterized Hit- tr|I0YI33|I0YI33_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,28.37,1e-18,Nucleotid_trans,Nucleotide-diphospho-sugar transferase;
seg,NULL; UNCHARACTERIZED,NULL; RETICULON,Re,CUFF.46638.1
         (354 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01220.1 | Symbols:  | Nucleotide-diphospho-sugar transferase...   479   e-135
AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransfe...   422   e-118
AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransfe...   421   e-118
AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specific...   410   e-115
AT4G01220.2 | Symbols:  | Nucleotide-diphospho-sugar transferase...   356   2e-98
AT1G70630.1 | Symbols:  | Nucleotide-diphospho-sugar transferase...    64   2e-10
AT4G19970.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nucleotide...    54   1e-07

>AT4G01220.1 | Symbols:  | Nucleotide-diphospho-sugar transferase
           family protein | chr4:513431-515648 REVERSE LENGTH=360
          Length = 360

 Score =  479 bits (1234), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/356 (67%), Positives = 265/356 (74%), Gaps = 3/356 (0%)

Query: 2   SSFLHQRSLTNPLSNPFPVSSPSTNS--KKPISIXXXXXXXXXXXXXXXXXXXCPWVGMP 59
             FLHQR + NP +NPF  S  ST+S   +PIS+                    PW G P
Sbjct: 4   QKFLHQRPIQNPFTNPFSSSPLSTSSISNRPISLLSRNGLLLLLALLVILGVFLPWAGSP 63

Query: 60  YGLSFTS-KPAVSKWGHYTLEQALSFVARNGTVIVCIVSQPYLPFLNNWLISISMQKRQD 118
              S     P+ SKW  Y+L QA+ FVA+NGTVIVC VS PYLPFLNNWLIS+S QK QD
Sbjct: 64  LFPSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQD 123

Query: 119 MVLVIAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEH 178
            VLVIAEDY +LYKVNE WPGHAVLIPP L+++ AHKFGS+GFFNFTARRP HLL+ILE 
Sbjct: 124 QVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILEL 183

Query: 179 GYSVMYNDVDMVWLADPFPYLVGNHDVYFTDDMTEIKPLNHSHDLPPPGKKGRPYICSCM 238
           GY+VMYNDVDMVWL DPF YL G HD YF DDMT IKPL+HSHDLPPPGKKGR YICSCM
Sbjct: 184 GYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPLDHSHDLPPPGKKGRTYICSCM 243

Query: 239 IFLHPTDGSXXXXXXXXXXXXXQPWSRTKKSNDQPAFNWALMKNAKEVDLYLLPQPAFPT 298
           IFL PT+G+             QPWSR KK+NDQP FNWAL K A +VD+YLL Q AFPT
Sbjct: 244 IFLRPTNGAKLLMKKWIEELETQPWSRAKKANDQPGFNWALNKTANQVDMYLLSQAAFPT 303

Query: 299 GGLYFKNKTWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDDHAKESPLGTL 354
           GGLYFKNKTWVKETKGKH IIHNNYIVGFEKKIKRFRD+ LWLVDDHA ESPLG L
Sbjct: 304 GGLYFKNKTWVKETKGKHAIIHNNYIVGFEKKIKRFRDFNLWLVDDHASESPLGKL 359


>AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan
           xylosyltransferase 1 | chr4:764564-766596 FORWARD
           LENGTH=361
          Length = 361

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/309 (67%), Positives = 237/309 (76%), Gaps = 8/309 (2%)

Query: 54  PWVGMPYGL------SFTSKPAVSKWGHYTLEQALSFVARNGTVIVCIVSQPYLPFLNNW 107
           PW G P  L      S  S    SKW  YTL QA  FVA+NGTVIVC VS P+LPFLNNW
Sbjct: 52  PWPGSPLFLFPNRLSSSLSPSPQSKWRDYTLAQAARFVAKNGTVIVCAVSSPFLPFLNNW 111

Query: 108 LISISMQKRQDMVLVIAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTAR 167
           LIS+S QK QD VLVIAEDY +LYKVNE WPGHAVLIPP L+++ A  FGS+GFFNFTAR
Sbjct: 112 LISVSRQKHQDKVLVIAEDYITLYKVNEKWPGHAVLIPPALDSKTAFSFGSQGFFNFTAR 171

Query: 168 RPSHLLKILEHGYSVMYNDVDMVWLADPFPYLVGNHDVYFTDDMTEIKPLNHSHDLPPPG 227
           RP HLL+ILE GY+VMYNDVDMVWL DPF YL G+HD YFTDDM +IKPLNHSHDLP P 
Sbjct: 172 RPQHLLQILELGYNVMYNDVDMVWLQDPFLYLEGSHDAYFTDDMPQIKPLNHSHDLPHPD 231

Query: 228 KKGRPYICSCMIFLHPTDGSXXXXXXXXXXXXXQPWSRTK--KSNDQPAFNWALMKNAKE 285
           + G  YICSCMI+L PT+G+             Q WS +   K+NDQPAFN AL K A +
Sbjct: 232 RNGETYICSCMIYLRPTNGAKLLMKKWSEELQSQAWSESIRFKANDQPAFNLALNKTAHQ 291

Query: 286 VDLYLLPQPAFPTGGLYFKNKTWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDDH 345
           VDLYLL Q AFPTGGLYFKN+ WV+ETKGKHVI+HNNYI+G+++K+KRF+DYGLWLVDDH
Sbjct: 292 VDLYLLSQVAFPTGGLYFKNEAWVQETKGKHVIVHNNYIIGYDRKMKRFQDYGLWLVDDH 351

Query: 346 AKESPLGTL 354
           A ESPLG L
Sbjct: 352 ALESPLGKL 360


>AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan
           xylosyltransferase 2 | chr4:756534-758364 FORWARD
           LENGTH=367
          Length = 367

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/288 (69%), Positives = 230/288 (79%), Gaps = 2/288 (0%)

Query: 69  AVSKWGHYTLEQALSFVARNGTVIVCIVSQPYLPFLNNWLISISMQKRQDMVLVIAEDYY 128
           A S+W +YTL QA  FVA NGTVIVC VS P+LPFLNNWLIS+S QK Q+ VLVIAEDY 
Sbjct: 79  AKSEWRNYTLAQAAKFVATNGTVIVCAVSSPFLPFLNNWLISVSRQKHQEKVLVIAEDYI 138

Query: 129 SLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSVMYNDVD 188
           +LYKVNE WPGHAVLIPP L+++ A+ FGS+GFFNFTARRP HLL+ILE GY+VMYNDVD
Sbjct: 139 TLYKVNEKWPGHAVLIPPALDSKTAYSFGSQGFFNFTARRPQHLLQILELGYNVMYNDVD 198

Query: 189 MVWLADPFPYLVGNHDVYFTDDMTEIKPLNHSHDLPPPGKKGRPYICSCMIFLHPTDGSX 248
           MVWL DPF YL G+HD YFTDDM +IKPLNHSHDLP P + G  YICSCMI+L PT+G+ 
Sbjct: 199 MVWLQDPFQYLEGSHDAYFTDDMPQIKPLNHSHDLPAPDQNGETYICSCMIYLRPTNGAK 258

Query: 249 XXXXXXXXXXXXQPWSRTK--KSNDQPAFNWALMKNAKEVDLYLLPQPAFPTGGLYFKNK 306
                       Q WS +   K+NDQPAFN AL K A +VDLYLL Q AFPTGGLYF + 
Sbjct: 259 LLMKKWSEELQSQAWSESIRFKANDQPAFNLALNKTAHQVDLYLLSQVAFPTGGLYFNDA 318

Query: 307 TWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDDHAKESPLGTL 354
            WVKETKGKHVI+HNNYI+G+++K++RF+DYGLWLVDDHA ESPLG L
Sbjct: 319 AWVKETKGKHVIVHNNYIIGYDRKMRRFQDYGLWLVDDHALESPLGKL 366


>AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specific
           Xylosyltransferase 1 | chr1:21185836-21188070 REVERSE
           LENGTH=383
          Length = 383

 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/284 (67%), Positives = 223/284 (78%), Gaps = 2/284 (0%)

Query: 73  WGHYTLEQALSFVARNGTVIVCIVSQPYLPFLNNWLISISMQKRQDMVLVIAEDYYSLYK 132
           W  Y+L QA+ FVA+N TVIVC VS P+LPFLNNWLISIS QK Q+ VLVIAEDY +LYK
Sbjct: 67  WRDYSLAQAVKFVAKNETVIVCAVSYPFLPFLNNWLISISRQKHQEKVLVIAEDYATLYK 126

Query: 133 VNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSVMYNDVDMVWL 192
           VNE WPGHAVLIPP L+ + AHKFGS+GFFN T+RRP HLL ILE GY+VMYNDVDMVWL
Sbjct: 127 VNEKWPGHAVLIPPALDPQSAHKFGSQGFFNLTSRRPQHLLNILELGYNVMYNDVDMVWL 186

Query: 193 ADPFPYLVGNHDVYFTDDMTEIKPLNHSHDLPPPGKKGRPYICSCMIFLHPTDGSXXXXX 252
            DPF YL G++D YF DDM  IKPLNHSHDLPP  + G  Y+CSCMIFL  TDG      
Sbjct: 187 QDPFDYLQGSYDAYFMDDMIAIKPLNHSHDLPPLSRSGVTYVCSCMIFLRSTDGGKLLMK 246

Query: 253 XXXXXXXXQPWSRT--KKSNDQPAFNWALMKNAKEVDLYLLPQPAFPTGGLYFKNKTWVK 310
                   QPW+ T  KK +DQPAFN AL K A +V +YLLPQ AFP+GGLYF+N+TWV 
Sbjct: 247 TWVEEIQAQPWNNTQAKKPHDQPAFNRALHKTANQVKVYLLPQSAFPSGGLYFRNETWVN 306

Query: 311 ETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDDHAKESPLGTL 354
           ET+GKHVI+HNNYI+G++KK+KRF+D+ LWLVDDHA ESPLG L
Sbjct: 307 ETRGKHVIVHNNYIIGYDKKMKRFQDFSLWLVDDHALESPLGKL 350


>AT4G01220.2 | Symbols:  | Nucleotide-diphospho-sugar transferase
           family protein | chr4:514146-515648 REVERSE LENGTH=299
          Length = 299

 Score =  356 bits (913), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 184/294 (62%), Positives = 208/294 (70%), Gaps = 4/294 (1%)

Query: 4   FLHQRSLTNPLSNPFPVSSPSTNS--KKPISIXXXXXXXXXXXXXXXXXXXCPWVGMPYG 61
           FLHQR + NP +NPF  S  ST+S   +PIS+                    PW G P  
Sbjct: 6   FLHQRPIQNPFTNPFSSSPLSTSSISNRPISLLSRNGLLLLLALLVILGVFLPWAGSPLF 65

Query: 62  LSFTS-KPAVSKWGHYTLEQALSFVARNGTVIVCIVSQPYLPFLNNWLISISMQKRQDMV 120
            S     P+ SKW  Y+L QA+ FVA+NGTVIVC VS PYLPFLNNWLIS+S QK QD V
Sbjct: 66  PSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQDQV 125

Query: 121 LVIAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGY 180
           LVIAEDY +LYKVNE WPGHAVLIPP L+++ AHKFGS+GFFNFTARRP HLL+ILE GY
Sbjct: 126 LVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILELGY 185

Query: 181 SVMYNDVDMVWLADPFPYLVGNHDVYFTDDMTEIKPLNHSHDLPPPGKKGRPYICSCMIF 240
           +VMYNDVDMVWL DPF YL G HD YF DDMT IKPL+HSHDLPPPGKKGR YICSCMIF
Sbjct: 186 NVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPLDHSHDLPPPGKKGRTYICSCMIF 245

Query: 241 LHPTDGSXXXXXXXXXXXXXQPWSRTKKSNDQPAFNWALMKNAKEV-DLYLLPQ 293
           L PT+G+             QPWSR KK+NDQP FNWAL K A +V   +L+PQ
Sbjct: 246 LRPTNGAKLLMKKWIEELETQPWSRAKKANDQPGFNWALNKTANQVCSFFLVPQ 299


>AT1G70630.1 | Symbols:  | Nucleotide-diphospho-sugar transferase
           family protein | chr1:26632118-26633991 FORWARD
           LENGTH=537
          Length = 537

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 18/279 (6%)

Query: 76  YTLEQALSFVA-RNGTVIVCIVSQPYLPFLNNWLISISMQKRQD-MVLVIAEDYYSLYKV 133
           + LE  L  VA +N TV++ +    Y   L +W+  +   K  + +V  + ++ Y    +
Sbjct: 259 FDLESLLPLVADKNRTVVLSVAGYSYKDMLMSWVCRLRRLKVPNFLVCALDDETYQFSIL 318

Query: 134 NELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSVMYNDVDMVWLA 193
             L        P  +   D H FGSK F   T  +   +LKIL+ GY+V+ +DVD+ W  
Sbjct: 319 QGLPVFFDPYAPKNISFNDCH-FGSKCFQRVTKVKSRTVLKILKLGYNVLLSDVDVYWFR 377

Query: 194 DPFPYLVGNHDVYF---TDDMTEIKPLNHSHDLPPP---GKKGRPYICSCMIFLHPTDGS 247
           +P P L           +D+     P+N    L       +   P I +    +     S
Sbjct: 378 NPLPLLQSFGPSVLAAQSDEYNTTAPINRPRRLNSGFYFARSDSPTIAAMEKVVKHAATS 437

Query: 248 XXXXXXXXXXXXXQPWSRTKKSND---QPAFNWALMKNAKEVDLYLLPQPAFPTGGLYFK 304
                              +  +D   +P  N  +    + +D  L P  A+  G L+ K
Sbjct: 438 GLSEQPSFYDTLCGEGGAYRLGDDRCVEPETNLTV----QFLDRELFPNGAY--GDLWLK 491

Query: 305 NKTWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVD 343
                +  K    ++HNN+I G  KK++R    GLW  D
Sbjct: 492 EDVRAECEKKHCFVLHNNWISGRLKKLERQMMKGLWEYD 530


>AT4G19970.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Nucleotide-diphospho-sugar transferase, predicted
           (InterPro:IPR005069); BEST Arabidopsis thaliana protein
           match is: Nucleotide-diphospho-sugar transferase family
           protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466
           proteins in 35 species: Archae - 0; Bacteria - 0;
           Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other
           Eukaryotes - 49 (source: NCBI BLink). |
           chr4:10818242-10825343 FORWARD LENGTH=715
          Length = 715

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 86  ARNGTVIVCIVSQPYLP-------FLNNWLISISMQKRQDMVLVIAEDYYSLYKVNELWP 138
             N TVIV  ++Q +         FL ++ I    +K    V+V+  D  +  + ++L P
Sbjct: 451 TENRTVIVTTLNQAWAEPNSLFDLFLESFRIGQGTKKLLQHVVVVCLDSKAFARCSQLHP 510

Query: 139 GHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSVMYNDVDMVWLADPFPY 198
               L     +      F +  +     RR   L ++LE GY+ ++ D D++WL DPFP 
Sbjct: 511 NCYYLKTTGTDFSGEKLFATPDYLKMMWRRIELLTQVLEMGYNFIFTDADIMWLRDPFPR 570

Query: 199 LVGNHDVYFTDD 210
           L  + D     D
Sbjct: 571 LYPDGDFQMACD 582